Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08391 ATGCGAGGATGTTTCTTCTTCTTCTTCTTCCTCTTCTTGTTCATCACAATCTCAACTTCTACAGCCACAGACACGTTAACCTCATCGCAAATTCTCAGAACAAATCAGACCCTTGAATCTCTTCAAGGATCATTCGTTCTTGGTTTCATCTCAGGAACATCTTCCAACGTTTATTTAGCCATATGGTACAAAAACATCCCAGACACTGTTGTTTGGGTCGCTAACAGAGACAACCCTCTCCAAAATTCAACCGACACCTTCCTCAAAATCACTGACGATGGAAACATAGTACTTCTCAATTCATCATCAGACTCAAACAACCTCGTTTGGTCTTCGAATTCTTCGAATCAAACAAATGCTAAAAACCAAGTTCTTGTTCTTCAGCTTTTAGATACTGGAAATCTAGTACTCAGAGAAACAAACATGAATGATCCAACTAAATATCTATGGCAAAGCTTCGATCACCCGACAGATACTTTGTTACCAAACATGACCATGGGTTGGAATTTCGACAAGAAAACTGAAAAGCACTTGACATCATGGAAGAACACAGGTGAAGATCCTTCCTCAGGTGATTATTCATTCAAGATTGATTTTCATGGTTTACCAGAAGTTTTCCTGCGGAATGATGATACGATAATATACCGAAGTGGACCGTGGAATGGTGAAAGATTCAGCGGTGTACCGGAGATGGAACCGGACACAGATTCGATAGTATTCAGTTTCTCATCGAACGAACACGGTGTGAACTACTCGTTTTCGATTGGGAATAAGTCGATTTTTTCGAGACTTGTAGTGACTTCTGATGGTCAACTTCAACGTCTAACTTGGGTTCAGAGTAGCAAAACATGGACAAAGTTTTGGTACGCGCCGAAAGATCAATGTGATGATTACAAAGAATGTGGTCCTTATGGTGTGTGTGATTCCAACGCTTCGCCGGTTTGTGAATGCATGAAAGGTTTTAGTCCTAAGAATGAGCAAGCATGGAAATTGAGAGATGGATCTGATGGGTGTGTTAGGGATAAGGATTTGAATTGTACAAGTGATAAATTTTATCATATGGAGAATGTGAAGTTGCCTGATACAACCTCAGTGTTTGTGAACACGACAATGGAGATCGATGAATGCGGTAAATTGTGTCATAGGAATTGTTCTTGTACTGGTTATGCTAATATTTATATAAGTAATGGAGGAAGTGGTTGTGTTATGTGGTTTGATGAACTTAATGATATTAGAAGTTATCCTGATGGTGGACAAGATCTTTTTGTTAGATTAGCAGCTTCTGAGCTAGATAACTCAGGATCTACTAAGAAAAGTCATAAAGCTGAGATTATAGGAATCACAATTTCTGCAGCTGTTTTGGTTTTGGGATTGTGTATCCTTTTATGTAAGAAGAGGAAATTGCTAAGATATGGAAAGACAGACAACAGCAGAGGTTCTATCCAAAGAAGCAGAGAATTGTTGATGAATGAGATGGTTTTTTCAAGTCATAGAGAAGCCTCAGGAGAAAGGAACATGGATGAACTAGACTTGCCAATGTTTGATTTTAATACCATAATAATAGCTACAAATAACTTCTTGGAAGAAAACAAACTTGGACATGGAGGCTTTGGAAGTGTTTATAAGGGAAGGTTGATTGAAGGGCAAGAAATTGCTGTCAAGAGGCTATCGAAAACTTCGGGGCAAGGAAATGAAGAGTTTAAGAATGAGGTCAAGTTGATTGCCAAGCTTCAACATCGAAACCTTGTTCGGCTTTTAGGTTGCTGCATTGATCAGGATGAGAAGCTTCTTGTGTATGAGTATATGAAAAATAGAAGTCTTGATTCCATTTTGTTTGACAAAGCTAGAAAATCCTTATTGGACTGGAAAAAGCGATTCGACGTTATATGCGGAATCGCTAGAGGGCTTCTTTATTTGCATCATGATTCAAGACTCCGGATTATCCATAGGGATCTCAAGGCAAGCAATATTTTACTCGACGGCGAAATGAATCCAAAAATATCGGATTTTGGGATGGCTCGAATATTTGGCCATGATCAAACAGAAGCAAATACATTGCGAGTTGTCGGAACATATGGTTATATGTCTCCTGAATATGCTATGGACGGAAACTTCTCAGTCAAATCAGATGTTTTTAGCTTTGGAGTTCTTGTGCTAGAGATTATAAGTGGAAAGAAAAATAGAGGATTCTACTACGCAAACGATGATATGAATCTTCTAAAGAATGCATGGGGACAGTGGAGAGAAGGAAAAGCATTGGAACTCATCGATTCGTCGATTGGCGATTCATTTACAGAATCAGAAGTTCTTAGATGCATACATGTTGGACTATTGTGCGTCCAAGAACGGGCCGAAGATAGGCCAACAATGCCTTCAGTGCTCTTGATGCTTGGAAGTGAAACTGCACTAATGCCAGAGCCTAGAAGTCCAGGGTTTTCTCTTGGAAGATCAAAGAATCCTCCGGAGACCGATTCATCTTCGAGTAAGCAAGATGAAACATGGAGTGTGAACCAAGTCACAGTCACATTGCTTGATGCTAGGTAG 2544 0.3954 MRGCFFFFFFLFLFITISTSTATDTLTSSQILRTNQTLESLQGSFVLGFISGTSSNVYLAIWYKNIPDTVVWVANRDNPLQNSTDTFLKITDDGNIVLLNSSSDSNNLVWSSNSSNQTNAKNQVLVLQLLDTGNLVLRETNMNDPTKYLWQSFDHPTDTLLPNMTMGWNFDKKTEKHLTSWKNTGEDPSSGDYSFKIDFHGLPEVFLRNDDTIIYRSGPWNGERFSGVPEMEPDTDSIVFSFSSNEHGVNYSFSIGNKSIFSRLVVTSDGQLQRLTWVQSSKTWTKFWYAPKDQCDDYKECGPYGVCDSNASPVCECMKGFSPKNEQAWKLRDGSDGCVRDKDLNCTSDKFYHMENVKLPDTTSVFVNTTMEIDECGKLCHRNCSCTGYANIYISNGGSGCVMWFDELNDIRSYPDGGQDLFVRLAASELDNSGSTKKSHKAEIIGITISAAVLVLGLCILLCKKRKLLRYGKTDNSRGSIQRSRELLMNEMVFSSHREASGERNMDELDLPMFDFNTIIIATNNFLEENKLGHGGFGSVYKGRLIEGQEIAVKRLSKTSGQGNEEFKNEVKLIAKLQHRNLVRLLGCCIDQDEKLLVYEYMKNRSLDSILFDKARKSLLDWKKRFDVICGIARGLLYLHHDSRLRIIHRDLKASNILLDGEMNPKISDFGMARIFGHDQTEANTLRVVGTYGYMSPEYAMDGNFSVKSDVFSFGVLVLEIISGKKNRGFYYANDDMNLLKNAWGQWREGKALELIDSSIGDSFTESEVLRCIHVGLLCVQERAEDRPTMPSVLLMLGSETALMPEPRSPGFSLGRSKNPPETDSSSSKQDETWSVNQVTVTLLDAR 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08391 847 Pfam Domain of unknown function (DUF3403) 799 847 IPR021820 GO:0004674
Vivi1g08391 847 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 805 - -
Vivi1g08391 847 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Vivi1g08391 847 Pfam Receptor serine/threonine kinase 482 516 IPR022126 GO:0004674
Vivi1g08391 847 CDD PAN_AP_plant 343 426 - -
Vivi1g08391 847 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 788 - -
Vivi1g08391 847 ProSiteProfiles PAN/Apple domain profile. 346 426 IPR003609 -
Vivi1g08391 847 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 222 IPR036426 -
Vivi1g08391 847 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544
Vivi1g08391 847 CDD B_lectin 29 156 IPR001480 -
Vivi1g08391 847 MobiDBLite consensus disorder prediction 804 836 - -
Vivi1g08391 847 PIRSF SRK 1 847 IPR024171 GO:0004674
Vivi1g08391 847 Gene3D - 18 154 IPR036426 -
Vivi1g08391 847 SUPERFAMILY Protein kinase-like (PK-like) 511 813 IPR011009 -
Vivi1g08391 847 SMART serkin_6 526 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08391 847 ProSitePatterns Protein kinases ATP-binding region signature. 532 554 IPR017441 GO:0005524
Vivi1g08391 847 Gene3D Transferase(Phosphotransferase) domain 1 602 804 - -
Vivi1g08391 847 CDD STKc_IRAK 532 797 - -
Vivi1g08391 847 Pfam PAN-like domain 346 411 IPR003609 -
Vivi1g08391 847 Pfam D-mannose binding lectin 69 182 IPR001480 -
Vivi1g08391 847 MobiDBLite consensus disorder prediction 816 836 - -
Vivi1g08391 847 ProSiteProfiles Bulb-type lectin domain profile. 23 150 IPR001480 -
Vivi1g08391 847 SMART ntp_6 346 425 IPR003609 -
Vivi1g08391 847 SMART blect_4 29 156 IPR001480 -
Vivi1g08391 847 ProSiteProfiles Protein kinase domain profile. 526 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08391 847 Pfam Protein tyrosine and serine/threonine kinase 529 793 IPR001245 GO:0004672|GO:0006468
Vivi1g08391 847 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 490 601 - -
Vivi1g08391 847 Gene3D Phosphorylase Kinase; domain 1 489 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08391 Vivi-Chr1 240081930 240086296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08391 514 814 Receptor kinase-like Gene Family AT4G11530 63.576 1.46e-134 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g08391 PK_Tyr_Ser-Thr 6.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08391 - - gmx:100797331 1222.61