Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08389 ATGGTGAAGGTGGCTTCTTCTTTAGGGGATTTCAAAGGCTTTAGTGTAGATGATCATAATCATTTTGAGATCCTTCAATTTGCCGATGATACTATTTTGATTGGGGAGGACTCGTGGAACAATCTATGGACTTTTAAGGCCATCCTTAGAGGTTTTGAACTTGTATCCGATTTTCCTGTTAACTTGAACAAAAGTCGAATTTTTGGTGTGAATCTTGATTCGGATTTTATTCAACTCGGGTCTACTTTTCTTAATTGTGAGATTGGCTCGTCGTCTTTTGTCTTTCTTGGGATTCGGTTGGTATCAATCCTAGAAGGTGTGCGGTTTGGAGACCGACGTCAATGTGAAGACCTTCCTATATTTGAATTCAAAAACATTTTAATCGCGACAAATAACTTTGATTTAGCTAACAAGATTGGTCAAGGTGGTTTTGGTTCAGTGTATAAGGGGGAATTGCCCGATGGATTAGAAATAGCAGTGAAAAGGCTATCGAAAACTTCAGGACAAGGGTTAGAAGAATTTATGAATGAAGTGATTGTAATTTCAAAGCTTCAACATCGAAATCTTGTAAGACTTTTAGGTTGTTGCGTCGAAGGGGAAGAAAAGATGTTGGTCTACGAGTACATGTCTAATAATAGTTTAGACTTTTATCTTTTCGATCCAATACAAAAACAGGTTTTAGATTGGCAAAAACGATCATACATAATTGAAGGAATCTCCCGAGGATTGCTTTATCTTCACCGAGATTCAAGATTAAGAATAATACACCGAGATTTGAAGCTAAGTAATATTTTGTTGGATGGGGATTTGAATCCAAAAATATCAGACTTTGGCATGGCTAAAATCTTTGGAGGAACCGAAAATGAGGGAAATACAAGAAGAATCATGGGAACATATGGATATATGTCTCCTGAATATGCAATGGGAGGATTATTTTCAGAAAAATCAGATGTATTTAGCTTTGGAGTTATGCTCCTCGAAATAATAAGTGGTAAAAAAAATACAAGTTTCTATAATCACGAAGAAGCAATCAGCCTTTTAGGATACGTATGGAAACTATGGAAGGAAGGGGAGACAGTATCTTTGATAGATTCAGAAATATATAATCCAAATAATGTGGATCACGTTTTAAGATGCATTCATATTGGACTTCTTTGTGTGCAAGAAACTGCAAAGGAGAGACCTACCATGACAAAAGTTGTTTCAATGCTTAATAATGATATTGATAAATTTCCTTGTCCATGTCAACCTGCATTCGTTGAAAGACAAATTGAGGATAGAGGAGAATCATCTCAACAAATTCGTGTCTTGAGTTCGTTGAATGATGTCACTGTCACAAGCTTGCATGGCAGGTAA 1356 0.3628 MVKVASSLGDFKGFSVDDHNHFEILQFADDTILIGEDSWNNLWTFKAILRGFELVSDFPVNLNKSRIFGVNLDSDFIQLGSTFLNCEIGSSSFVFLGIRLVSILEGVRFGDRRQCEDLPIFEFKNILIATNNFDLANKIGQGGFGSVYKGELPDGLEIAVKRLSKTSGQGLEEFMNEVIVISKLQHRNLVRLLGCCVEGEEKMLVYEYMSNNSLDFYLFDPIQKQVLDWQKRSYIIEGISRGLLYLHRDSRLRIIHRDLKLSNILLDGDLNPKISDFGMAKIFGGTENEGNTRRIMGTYGYMSPEYAMGGLFSEKSDVFSFGVMLLEIISGKKNTSFYNHEEAISLLGYVWKLWKEGETVSLIDSEIYNPNNVDHVLRCIHIGLLCVQETAKERPTMTKVVSMLNNDIDKFPCPCQPAFVERQIEDRGESSQQIRVLSSLNDVTVTSLHGR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08389 451 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 1 100 IPR000477 -
Vivi1g08389 451 ProSitePatterns Protein kinases ATP-binding region signature. 139 161 IPR017441 GO:0005524
Vivi1g08389 451 Gene3D Phosphorylase Kinase; domain 1 110 208 - -
Vivi1g08389 451 SUPERFAMILY Protein kinase-like (PK-like) 118 436 IPR011009 -
Vivi1g08389 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Vivi1g08389 451 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 115 450 - -
Vivi1g08389 451 SMART serkin_6 133 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08389 451 ProSiteProfiles Protein kinase domain profile. 133 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08389 451 CDD STKc_IRAK 139 406 - -
Vivi1g08389 451 Pfam Protein tyrosine and serine/threonine kinase 135 404 IPR001245 GO:0004672|GO:0006468
Vivi1g08389 451 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 209 412 - -
Vivi1g08389 451 FunFam receptor-like serine/threonine-protein kinase SD1-8 108 208 - -
Vivi1g08389 451 Gene3D Transferase(Phosphotransferase) domain 1 209 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08389 Vivi-Chr1 240025133 240030531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08389 121 451 Receptor kinase-like Gene Family AT4G11530 55.490 8.61e-128 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g08389 PK_Tyr_Ser-Thr 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08389 - - vvo:131597423 907.901