Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08388 ATGAGAACTGGAGATACAAATGAAAATAGAGATGTAACAGGAAATGTTAAAGTAATCATCATAGCTACGGTCATAGTGGCAACATTTATTGTTGTTATTTGCACCTATTTCTTATGCTCACGAGCTTCTAAATATTCAGGGAAAATCAATCAAGAAAACCAAGTTAAAGTTGAAGACCTTCCTATATTTGAATTCAAAAACATTTTAATCGCGACAAATAACTTTGATTTAGCTAACAAGATTGGTCAAGGTGGTTTTGGTTCAGTGTATAAGGGGGAATTGCCCGATGGATTAGAAATAGCAGTGAAAAGGCTATCGAAAACTTCAGGACAAGGGTTAGAAGAATTTATGAATGAAGTGATTGTAATTTCAAAGCTTCAACATCGAAATCTTGTAAGACTTTTAGGTTGTTGCGTCGAAGGGGAAGAAAAGATGTTGGTCTACGAGTACATGTCTAATAATAGTTTAGACTTTTATCTTTTCGATCCAATACAAAAACAGGTTTTAGATTGGCAAAAACGATCATACATAATTGAAGGAATCTCCCGAGGATTGCTTTATCTTCACCGAGATTCAAGATTAAGAATAATACACCGAGATTTGAAGCTAAGTAATATTTTGTTGGATGGGGATTTGAATCCAAAAATATCAGACTTTGGCATGGCTAAAATCTTTGGAGGAACCGAAAATGAGGGAAATACAAGAAGAATCATGGGAACATATGGATATATGTCTCCTGAATATGCAATGGGAGGATTATTTTCAGAAAAATCAGATGTATTTAGCTTTGGAGTTATGCTCCTCGAAATAATAAGTGGTAAAAAAAATACAAGTTTCTATAATCACGAAGAAGCAATCAGCCTTTTAGGATACGTATGGAAACTATGGAAGGAAGGGGAGACAGTATCTTTGATAGATTCAGAAATATATAATCCAAATAATGTGGATCACGTTTTAAGATGCATTCATATTGGACTTCTTTGTGTGCAAGAAACTGCAAAGGAGAGACCTACCATGACAAAAGTTGTTTCAATGCTTAATAATGATATTGATAAATTTCCTTGTCCATGTCAACCTGCATTCGTTGAAAGACAAATTGAGGATAGAGGAGAATCATCTCAACAAATTCGTGTCTTGAGTTCGTTGAATGATGTCACTGTCACAAGCTTGCATGGCAGGTAA 1182 0.3469 MRTGDTNENRDVTGNVKVIIIATVIVATFIVVICTYFLCSRASKYSGKINQENQVKVEDLPIFEFKNILIATNNFDLANKIGQGGFGSVYKGELPDGLEIAVKRLSKTSGQGLEEFMNEVIVISKLQHRNLVRLLGCCVEGEEKMLVYEYMSNNSLDFYLFDPIQKQVLDWQKRSYIIEGISRGLLYLHRDSRLRIIHRDLKLSNILLDGDLNPKISDFGMAKIFGGTENEGNTRRIMGTYGYMSPEYAMGGLFSEKSDVFSFGVMLLEIISGKKNTSFYNHEEAISLLGYVWKLWKEGETVSLIDSEIYNPNNVDHVLRCIHIGLLCVQETAKERPTMTKVVSMLNNDIDKFPCPCQPAFVERQIEDRGESSQQIRVLSSLNDVTVTSLHGR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08388 393 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 151 354 - -
Vivi1g08388 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vivi1g08388 393 Gene3D Transferase(Phosphotransferase) domain 1 151 353 - -
Vivi1g08388 393 CDD STKc_IRAK 81 348 - -
Vivi1g08388 393 SUPERFAMILY Protein kinase-like (PK-like) 60 379 IPR011009 -
Vivi1g08388 393 Gene3D Phosphorylase Kinase; domain 1 38 150 - -
Vivi1g08388 393 ProSiteProfiles Protein kinase domain profile. 75 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08388 393 FunFam receptor-like serine/threonine-protein kinase SD1-8 47 150 - -
Vivi1g08388 393 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
Vivi1g08388 393 SMART serkin_6 75 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08388 393 Pfam Protein tyrosine and serine/threonine kinase 77 346 IPR001245 GO:0004672|GO:0006468
Vivi1g08388 393 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 9 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08388 Vivi-Chr1 240003711 240010820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08388 39 393 Receptor kinase-like Gene Family AT4G11530 52.486 3.19e-130 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g08388 PK_Tyr_Ser-Thr 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08388 - - vvo:131597423 677.937