Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08384 ATGCGAGGAGGTTACTTCTTCCTCTTCTTCTTGTTCATCACAATCTCAACCTCTACAGTCACAGACACGTTAACCTCATCACAAATTCTCAGAAGAAATCAGACCCTTCAGTCTCTTAAAGGATCATTCGTTCTTGGTTTCATCTCACGAACATCTTCCAACATTTATTTAGCCATATGGTACAAAGACATCCCAGACACTGTTGTTTGGGTCGCTAACAGAGACAACCCTCTTCAAAATTCAACAGACAGCTTTCTCAAAATCACTGACGATGGAAACATAGTACTTCTCAATTCATCATCAGTTTCCAACAACAACAACAACAACCTCGTTTGGTCTTCGAATCAAACGAATGCGAAAAACCAGGTTCTTGTTCTTCAGCTATTAGATACTGGAAACTTAGTACTCAGAGAAACAAACGTGAATGATCCAACAAAATATCTATGGCAAAGCTTCGATCACCCGACAGATACTTTGTTACCAAACATGACCATGGGTTGGAACATCAACGACAAAACTGAAAAGTACTTAACATCATGGAAGATCACAGGTGATGATCCTTCATCAGGAGATTATTCATTCAAAGTTGATTTTCATGGTTTACCAGAAGTTTTCCTGCGGAATGATGATACCATAATATACCGAAGTGGACCTTGGAATGGTGAAAGATTCAGCGGTGTACCAGAGATGCAAAATAGCACAGATTCAATAGTTTTTAGTTTCACATCAAACAAACACGGTGTGAACTACTCATTTTCGATTGGAAATAAGTCGACTTTTTCGAGACTTGTAGTGAATTCTAATGGTCAACTTCAACGTTTAACTTGGGTTCAGAGTAACAAAACATGGACAACGTTTTGGTATTCACCTAAAGATCAATGTGATGAATACAAAGAATGTGGTCCTTATGGTGTATGTGATTCCAACGCTTCGCCAGTTTGTAAATGCATGAAAGGCTTCCGTCCTAAGAATAAGCAATTTTGGAAACTGAGAGATGGATCTGATGGATGTGTGATGGATAAGGATTTGGATTGCGACAGTGATAAATTTTATCGAATGGAGAATGTGAAGTTGCCTGATACAACGTCGGTGTTTGTGAACAGAACAATGGATATTGATGAATGTGGTGAATTGTGTCATAGGAATTGTTCTTGTACTGGTTATGCTAATATTTATATAAGTAATGGAGGAAGTGGTTGTGTTACGTGGAGTGATGAACTTAATGATATTAGAAGTTATCCTGATGGTGGACAAGATCTCTTTGTTAGATTAGCAGCTTCTGAGCTAGATGAGAATAGAGATGTAAAAAGAAATGTTAAAGCAATCATCATAGCTACGGTCATAGCAGCAACATTTATTGTTGTCATTTGTACCTATTTCTTATGGTCACGAGCTTCTAAATATTCAGGGAAAACCAATCAAGAAATTGAAGTTAAAGTTGAGGACCTTCCTATATTTGAATTCAAAAACATTTTAACAGCAACAAATAATTTTGATTTAGCTAACAAGATTGGCCAAGGCGGTTTCGGTTCAGTGTATAAGGGAGAATTGCCTGATGGATTAGAAATAGCAGTAAAAAGGCTTTCGAAAGCTTCAGGACAAGGACAAGAAGAATTTATGAATGAAGTGATTGTAATTTCGAAGCTTCAACATCGAAATCTTGTAAGACTTTTAGGTTGTTGCATCAAAGGGGAAGAAAAGATGTTGGTCTATGAATACATGCCTAATAACAGTTTAGACTTTTATTTATTCGATCCAATACAAAAGCAGGTTTTAGATTGGCAAAAACGATCATACATAATTGAAGGAATCTCCCGAGGATTGCTTTATCTTCACCGAGATTTAAGATTAAGAATAATACATCGAGATTTGAAGCTAGGTAATATTTTATTGGATGGGAATTTGAATCCAAAAATATCAGACTTTGGCATGGCCAAAATCTTTGGAGGCACCGAAAATGAGGGAAATACAAGAAGAATCATGGGAACATATGGATACATGTCTCCTGAATATGCAATGGAAGGATTATTTTCAGAAAAATCCGATGTATTTAGCTTTGGAGTTATGCTCCTCGAAATAATAAGTGGTAAAAAAAATACAAGTTTCTATAATCACGAAGAAGCAATCAGCCTTTTAGGATACGTATGGAAACTATGGAAGAAAGGGGAGATAGTATCTTTGATAGATTCAGAAATATATAATCCAAATAATGTGGATCACGTTTTAAGATGCATTCATATTGGACTTCTTTGTGTGCAAGAAACTGCAAAGGAGAGACCTACCATGACAAAAGTTGTTTCAATGCTTAATAATGATATTGATAAATTTCCTCGTCCATGTCAACCTGCATTCGTTGAAAGACAAATTGAGGATAGAGGAGAATCATCTCAACAAGTTCGTGTCTTGAGTTCGTTGAATGATGTCACTGTCACAAGCTTGCATGGCAGGTAA 2451 0.3652 MRGGYFFLFFLFITISTSTVTDTLTSSQILRRNQTLQSLKGSFVLGFISRTSSNIYLAIWYKDIPDTVVWVANRDNPLQNSTDSFLKITDDGNIVLLNSSSVSNNNNNNLVWSSNQTNAKNQVLVLQLLDTGNLVLRETNVNDPTKYLWQSFDHPTDTLLPNMTMGWNINDKTEKYLTSWKITGDDPSSGDYSFKVDFHGLPEVFLRNDDTIIYRSGPWNGERFSGVPEMQNSTDSIVFSFTSNKHGVNYSFSIGNKSTFSRLVVNSNGQLQRLTWVQSNKTWTTFWYSPKDQCDEYKECGPYGVCDSNASPVCKCMKGFRPKNKQFWKLRDGSDGCVMDKDLDCDSDKFYRMENVKLPDTTSVFVNRTMDIDECGELCHRNCSCTGYANIYISNGGSGCVTWSDELNDIRSYPDGGQDLFVRLAASELDENRDVKRNVKAIIIATVIAATFIVVICTYFLWSRASKYSGKTNQEIEVKVEDLPIFEFKNILTATNNFDLANKIGQGGFGSVYKGELPDGLEIAVKRLSKASGQGQEEFMNEVIVISKLQHRNLVRLLGCCIKGEEKMLVYEYMPNNSLDFYLFDPIQKQVLDWQKRSYIIEGISRGLLYLHRDLRLRIIHRDLKLGNILLDGNLNPKISDFGMAKIFGGTENEGNTRRIMGTYGYMSPEYAMEGLFSEKSDVFSFGVMLLEIISGKKNTSFYNHEEAISLLGYVWKLWKKGEIVSLIDSEIYNPNNVDHVLRCIHIGLLCVQETAKERPTMTKVVSMLNNDIDKFPRPCQPAFVERQIEDRGESSQQVRVLSSLNDVTVTSLHGR 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08384 816 Pfam Protein tyrosine and serine/threonine kinase 500 769 IPR001245 GO:0004672|GO:0006468
Vivi1g08384 816 ProSiteProfiles PAN/Apple domain profile. 345 425 IPR003609 -
Vivi1g08384 816 SMART blect_4 27 155 IPR001480 -
Vivi1g08384 816 CDD B_lectin 27 155 IPR001480 -
Vivi1g08384 816 Gene3D - 16 153 IPR036426 -
Vivi1g08384 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Vivi1g08384 816 SMART ntp_6 345 424 IPR003609 -
Vivi1g08384 816 Gene3D Transferase(Phosphotransferase) domain 1 574 778 - -
Vivi1g08384 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 463 573 - -
Vivi1g08384 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 574 777 - -
Vivi1g08384 816 Pfam D-mannose binding lectin 67 181 IPR001480 -
Vivi1g08384 816 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 760 - -
Vivi1g08384 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 221 IPR036426 -
Vivi1g08384 816 Pfam PAN-like domain 345 410 IPR003609 -
Vivi1g08384 816 SMART serkin_6 498 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08384 816 ProSitePatterns Protein kinases ATP-binding region signature. 504 526 IPR017441 GO:0005524
Vivi1g08384 816 PIRSF SRK 2 816 IPR024171 GO:0004674
Vivi1g08384 816 SUPERFAMILY Protein kinase-like (PK-like) 483 801 IPR011009 -
Vivi1g08384 816 ProSiteProfiles Protein kinase domain profile. 498 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08384 816 CDD STKc_IRAK 504 771 - -
Vivi1g08384 816 ProSiteProfiles Bulb-type lectin domain profile. 21 149 IPR001480 -
Vivi1g08384 816 Pfam S-locus glycoprotein domain 214 324 IPR000858 GO:0048544
Vivi1g08384 816 CDD PAN_AP_plant 342 425 - -
Vivi1g08384 816 Gene3D Phosphorylase Kinase; domain 1 461 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08384 Vivi-Chr1 239831533 239854875 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08384 437 812 Receptor kinase-like Gene Family AT4G05200 50.000 1.49e-123 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g08384 PK_Tyr_Ser-Thr 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08384 - - gmx:100797331 923.694