Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08372 ATGATGAAGAAAAAATGTGAACTCTGCAAAAGTCCAGCAAAGTTGTTCTGTGAATCAGATCAAGCAAGTCTTTGTTGGGAATGTGATACTAGGGTTCACACTGCAAATTTCATAGTCACAAAACATCAAAGGTTTCTTCTTTGTCATATTTGTCAATCTTTAACTGCTTGGCATGGAACTGGACCCAAGTTTGTTCCAACCATGTCTCTTTGTGACTATTGTGTTTCTCTTACCAACAATAACAATGATCATCGAGACGACGACGACGATGACGATGACGACGATGAAGATACCGATGAAGATGATGATGATGAAGAAAATCAAGTTGTTCCATGGAAATCTACACCTCCTCCACCAGTTTCTTCTTGTTCTTCAAATAGTGCAACTACATATTAA 396 0.3813 MMKKKCELCKSPAKLFCESDQASLCWECDTRVHTANFIVTKHQRFLLCHICQSLTAWHGTGPKFVPTMSLCDYCVSLTNNNNDHRDDDDDDDDDDEDTDEDDDDEENQVVPWKSTPPPPVSSCSSNSATTY 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08372 131 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vivi1g08372 131 CDD Bbox1_BBX-like 5 47 - -
Vivi1g08372 131 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Vivi1g08372 131 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vivi1g08372 131 MobiDBLite consensus disorder prediction 79 131 - -
Vivi1g08372 131 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 127 - -
Vivi1g08372 131 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08372 Vivi-Chr1 239318471 239319346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08372 2 105 C2C2-CO-like Transcription Factor Family AT4G27310 47.115 5.89e-33 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi1g08372 zf-B_box 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08372 - - cam:101492786 171.4