Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08327 ATGGGTTATTATTATTATAATTATTCCATATTGTGTGTTGTTTTGTTTTTATCCATTCAAATTTCTTTGGCTTCTTCAACTGAAGATCAAAAGAGAGATAAGATAACTGAGTTACCAGGACAACCAAAGAATGTTGGATTTGATCAGTATTCAGGTTATATAACTGTGAATGAACCGAATGGAAGAGCACTTTTTTACTGGTTGACTGAAGCACCACTGAGTAGCGAACCCGATTCAAAGCCACTAGTTCTATGGCTTAGCAATGGTCCCGGTTGTTCTGCTATTTCTTACGGTGCGGCCGAAGAAATTGGCCCTTTTCATATTAAGCCCGATGGCAAAACACTTTACTCAAATCCCTATGCTTGGAACAAACTGGCAAATATATTGTTCCTTGAGTCTCCTGCTGGTGTTGGTTTTTCTTATTCTAATAAAACATCAGATCTTTACACATTTGGTGACAAGAAAAACGCTGAGGATTCATATATTTTTCTTGTTAATTGGTTGGAAAGATTTCCTCAGTATAAGCATAGAGAACTCTACATTGGTGGGATAAGTTATGCAGGTTATTATGTTCCTCAATTGGCTCAAATTGTTTACGAGAGAAACAAGGGAATCAATAATCCAGTTATCAATCTTAAGGGATTCTTGGTTGGAAATGGTGTTATTGATGATTATCATGATTTAGTCGGAACATTTGAGTACTGGTGGACACATGGTTTGATTTCAGATTCTACGTATAAACTTCTAGGAACTGCGTGTGACTCTGGATCTTCTTTGCATCCATCAGCGCAATGTACGCAGGCTCGTAAAGTTGCAACTGCTGAGCAAGGAAACATCGATCTATATAGCATTTATTTTCCGCTTTGTAACAATACATCATCGCCATGGATGTCTAGAGTAGATGATCCATGTTTCCAAACGTATTCTGATTTGTATTTCAACCGTCCGGAAGTTCAAAAGGCACTCCATGCCAATGTAACAGGGATTCCATATACATGGAAGGGATGCAGTGATATTGTTGGGAATAATTGGGGTGATTCGGCGTTGTCTGTGCTTCCTATATATCGTGAACTTATCAATGCTAGTCTAAGGATATGGGTATTCAGTGGAGACGCTGATGCTATAGTACCACTAACCGCCACTCGGCGTTCTATTAATGCATTGAAGCTTCCAACCATCGTGAATTGGTATCCTTGGTATGACAGTGGCAAGGTTGCTGGATGGAGTCAAGTTTATAAAGGGCTAACATTGGTGACAGTAAGAGGAGCTGGACATAAGGTTGCTTTTCATAAGCCTCGCGAGGCGTTTACTCTTTTTAAATCATATTTGGAGAACAAGAACATGCCATCCTCAACTTGA 1359 0.3922 MGYYYYNYSILCVVLFLSIQISLASSTEDQKRDKITELPGQPKNVGFDQYSGYITVNEPNGRALFYWLTEAPLSSEPDSKPLVLWLSNGPGCSAISYGAAEEIGPFHIKPDGKTLYSNPYAWNKLANILFLESPAGVGFSYSNKTSDLYTFGDKKNAEDSYIFLVNWLERFPQYKHRELYIGGISYAGYYVPQLAQIVYERNKGINNPVINLKGFLVGNGVIDDYHDLVGTFEYWWTHGLISDSTYKLLGTACDSGSSLHPSAQCTQARKVATAEQGNIDLYSIYFPLCNNTSSPWMSRVDDPCFQTYSDLYFNRPEVQKALHANVTGIPYTWKGCSDIVGNNWGDSALSVLPIYRELINASLRIWVFSGDADAIVPLTATRRSINALKLPTIVNWYPWYDSGKVAGWSQVYKGLTLVTVRGAGHKVAFHKPREAFTLFKSYLENKNMPSST 452
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08327 452 FunFam Carboxypeptidase 29 291 - -
Vivi1g08327 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Vivi1g08327 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 415 428 IPR001563 GO:0004185|GO:0006508
Vivi1g08327 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Vivi1g08327 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Vivi1g08327 452 Gene3D - 351 444 - -
Vivi1g08327 452 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 432 IPR001563 GO:0004185|GO:0006508
Vivi1g08327 452 SUPERFAMILY alpha/beta-Hydrolases 30 448 IPR029058 -
Vivi1g08327 452 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Vivi1g08327 452 Pfam Serine carboxypeptidase 39 445 IPR001563 GO:0004185|GO:0006508
Vivi1g08327 452 FunFam Carboxypeptidase 351 445 - -
Vivi1g08327 452 Gene3D - 304 340 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi1g08327 Vivi-Chr1 238420069 238422680 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08327 314 446 Calmodulin-binding Proteins AT2G22960 29.851 6.49e-13 65.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08327 K16297 - gmx:100805722 725.702