Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08324 ATGGACGGACTAAATATTCCTTACAATCCTCGTACTGTCGATGAAGTCTTTCGGGATTTCAAAGGTCGCAGAACTGCATTAGTCAAAGCCCTATCTACTGATGTCGACGAGTTCTTCCGGCAGTGTGATCCCGATAAGGAAAACCTTTGTCTTTATGGATCTCCCAGTGAGCAGTGGGAGGTGAACCTGCCAGCTGAGGAAGTGCCGCCTGAGATACCGGAACCTGCATTGGGTATTAACTTTGCGAGAGATGGGATGCAAGAAAAGGATTGGTTGTCTTTGGTTGCTGTACACAGTGATGCTTGGTTAATGTCTGTGGCTTTTTATTTCGGTGCTCGGTTTGGATTCAGTAAAGCTGATAGGAAGAAACTATTTGATATGATAAATGATCTTCCAACAGTCTTTGAAACTATTGCGGGGGTTGTCAAGAAACAAGGAAAGGAAAAGTCGTCATCGGTTTCTAATAATAGCAGTACCAAATCTAAAGCAAACCCCAAGCAAGGTTCTGAACCTCAGGCAAAATTTTCAAAACCAATGGCAATGCAAATGCAAATGCAATCAAAGGAAAATGACGAGGACGGTCTAGGTGTGGACGAGGAAGATGAGGAAGATGAGGAAGTTGTGGAAGATGACGAAGAGAACGGAGAGACTTTTTGTGGGGCATGCGGAGAGAGCTATGAAACTAACCAGTTCTGGATTTGCTGTGACATTTGTGAGGTGTGGTTTCATGGAAAATGCGTGAAGATTACTCAAGCAAGAGCAGATCATATCAAACAGTACAAATGTCCATCTTGCAGCAGCAAGAGAGCTCGCCCTAGTAGTTTGATATAG 831 0.438 MDGLNIPYNPRTVDEVFRDFKGRRTALVKALSTDVDEFFRQCDPDKENLCLYGSPSEQWEVNLPAEEVPPEIPEPALGINFARDGMQEKDWLSLVAVHSDAWLMSVAFYFGARFGFSKADRKKLFDMINDLPTVFETIAGVVKKQGKEKSSSVSNNSSTKSKANPKQGSEPQAKFSKPMAMQMQMQSKENDEDGLGVDEEDEEDEEVVEDDEENGETFCGACGESYETNQFWICCDICEVWFHGKCVKITQARADHIKQYKCPSCSSKRARPSSLI 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08324 276 MobiDBLite consensus disorder prediction 147 171 - -
Vivi1g08324 276 CDD PHD_AL_plant 218 268 IPR044104 -
Vivi1g08324 276 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Vivi1g08324 276 ProSiteProfiles Zinc finger PHD-type profile. 216 268 IPR019787 -
Vivi1g08324 276 MobiDBLite consensus disorder prediction 146 213 - -
Vivi1g08324 276 PANTHER CPG BINDING PROTEIN 9 271 IPR045104 GO:0006355|GO:0042393
Vivi1g08324 276 ProSitePatterns Zinc finger PHD-type signature. 219 265 IPR019786 -
Vivi1g08324 276 FunFam PHD finger alfin-like protein 210 267 - -
Vivi1g08324 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 274 IPR013083 -
Vivi1g08324 276 MobiDBLite consensus disorder prediction 193 213 - -
Vivi1g08324 276 SMART PHD_3 218 266 IPR001965 -
Vivi1g08324 276 SUPERFAMILY FYVE/PHD zinc finger 209 270 IPR011011 -
Vivi1g08324 276 Pfam PHD-finger 218 267 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08324 Vivi-Chr1 238394097 238396607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08324 1 271 Alfin-like Transcription Factor Family AT3G42790 61.029 1.60e-107 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vivi1g08324 Alfin 4.8e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08324 K26274 - vvi:100247536 390.578