Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08290 ATGGGGTTTTCGAAATCGGAGTTGCATGTGCCAATTTTTGTTACCTCCATGATTGTGATTCTAATGGGAAGTTTCTGTGTTGCAGAAACTGACCCTGTTGATGTTGCAGCACTCAATAGTCTATATGCTGCTATGGAGTCACCGCCTCTTCTAGGGTGGAAGCCTGAGGGAGGGGATCCATGTTTAGAAATTTGGCAAGGTGTGGAATGTGTCTTCACCAACATAACTTCCATACGACTGGTAGGCTTGAATTTGGGTGGAGAGCTCGGCAGTAATTTGGATTTTCCATCCATTATAGAACTTGATCTTAGCAACAACCATATTGGAGGTGCCATTCCGTTCACTTTACCCCCTACTTTAACGAGCTTGTCTCTGGCAAGAAATCGGTTAAATGGAAGCATTCCCGATGCCTTATCCTTATTATCTTTTTTGGCAACCTTGGATTTGGCCGATAACAACTTGACCGGCGAGCTTCCTTCATCAATGGGGAGTTTATCATCTCTTACAGCTTTACGGTTGCAGAACAATCAACTCGGAGGGACCCTTTTAGTTTTGCAAGACCTTCCACTCGAGGAATTGAATATCGAGAATAATTTATTCTCCGGGCCAATTCCTCCGAACGTGTTGAACATCCCTAATTTGAAAAAAGACGGGAATCCGTTTAATACTTCTATTATTCCGACGCTGCCTGCTTTAGCCCCCTCACCTGAAGTTACCGGTCTATCTCCCGAAGAATCACCCTGGCATGTGGTTTATAGTCCTTCTGACTTCCCATCACCGTCGCCTGGAAATGTTAAGAAGTCTTTCCTAGCAAAGCACGGCTTTTGGATTGCCGGTGCCGGTGTATTAATATTTATCGCTTTGGGAATTTGTGTTTGTACAGCGTGGTGCTGTAAGAGAAACCCGAAAGATAAAAACTCTCAGAAGCTTGATGTGGAGGCTTTTCCAAATACTTTGCATAAACCTACTCACAATGACGCAGCTGAGAAAACATCGCGTTTCAATGAAGTTCCAAATAGGAGAACGAATTCGGTTCCAAAGGTTCAGGATGAACAAGATCGTTATGTCAACACTGTATCTGCAACTTCGGAATACAATAATGTTTCCAAACCTCCGCTCCTGCAGCCACCACCACATCCTCTGCCAATAGTTCCCGTTGAGAAGGTCACTGTCAATTCCGCAGTAACTACCAATGCCACTGAACGAAAAATCATGACAAGTTCCGTCAAAATGTATACCGTTGCATCACTTCAACAATATACAAATAGCTTTTCCCAAGAAAATCTTATTGGTGAAGGCACTCTCGGATCTGTATATAGAGCCGAGCTCCCTGATGGAAAGCTATTGGCGGTGAAGAAACTGGACACTAGAGCTTTCAAGGACCAGACCGACGAACAGTTTCTTCAATTGGTATCTAGCATCTCAAAAATCCAGCATGTTAATATTGCAAAGCTTGTCGGCTACTGTGCTGAGTATAATCAACGATTACTTATATACGAGTATTGTAATAACGGAACCCTACAAGATGCACTTCACGGTGATGATGAACACTGTATTAAATTTCCATGGAATGAACGCATTAAGGTCGCACTTGGTGCTGCAAGGGCTTTAGAGTATCTGCATGAGAATTTCCAGCCGCCCATTGTACATCGGAATTTTCGGTCTGCTAATGTTCTCCTGAATGAAAAGTCGGAAGTGTGTGTCTCTGATTGTGGATTAGGTCATTTGCTATCTTCTGGCGCCGTTGGCCAGTTATCTGGACGCCTCCTCACAGCTTACGGTTACAGTGCTCCAGAATTTGAGTCTGGAAGTTATACACAGCAAAGTGATGTGTTTAGTTTCGGGGTTGTAATGCTAGAACTTCTCACGGGAAGAAAATCGCACGACAGGTCACGGCCTCGCGGAGAGCAGTTTTTGGTGAGATGGGCAGTACCTCAACTGCATGACATTGATGCATTGTCGAAAATGGTTGACCCTCACTTAAATGGATCATATTCTATGAAGTCCTTGTCGCGTTTTGCAGATATTGTTTCGTCGTGTATTCAGCGTGAACCTGAATTCCGGCCAGCTATGTCTGAAATTGTTCAGGATCTCTTGCTAACGATGTAG 2109 0.4395 MGFSKSELHVPIFVTSMIVILMGSFCVAETDPVDVAALNSLYAAMESPPLLGWKPEGGDPCLEIWQGVECVFTNITSIRLVGLNLGGELGSNLDFPSIIELDLSNNHIGGAIPFTLPPTLTSLSLARNRLNGSIPDALSLLSFLATLDLADNNLTGELPSSMGSLSSLTALRLQNNQLGGTLLVLQDLPLEELNIENNLFSGPIPPNVLNIPNLKKDGNPFNTSIIPTLPALAPSPEVTGLSPEESPWHVVYSPSDFPSPSPGNVKKSFLAKHGFWIAGAGVLIFIALGICVCTAWCCKRNPKDKNSQKLDVEAFPNTLHKPTHNDAAEKTSRFNEVPNRRTNSVPKVQDEQDRYVNTVSATSEYNNVSKPPLLQPPPHPLPIVPVEKVTVNSAVTTNATERKIMTSSVKMYTVASLQQYTNSFSQENLIGEGTLGSVYRAELPDGKLLAVKKLDTRAFKDQTDEQFLQLVSSISKIQHVNIAKLVGYCAEYNQRLLIYEYCNNGTLQDALHGDDEHCIKFPWNERIKVALGAARALEYLHENFQPPIVHRNFRSANVLLNEKSEVCVSDCGLGHLLSSGAVGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSHDRSRPRGEQFLVRWAVPQLHDIDALSKMVDPHLNGSYSMKSLSRFADIVSSCIQREPEFRPAMSEIVQDLLLTM 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08290 702 Pfam Protein tyrosine and serine/threonine kinase 427 698 IPR001245 GO:0004672|GO:0006468
Vivi1g08290 702 ProSiteProfiles Protein kinase domain profile. 424 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08290 702 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 698 IPR046959 -
Vivi1g08290 702 SUPERFAMILY Protein kinase-like (PK-like) 403 699 IPR011009 -
Vivi1g08290 702 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 389 501 - -
Vivi1g08290 702 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 502 702 - -
Vivi1g08290 702 Gene3D Transferase(Phosphotransferase) domain 1 502 700 - -
Vivi1g08290 702 Gene3D Phosphorylase Kinase; domain 1 386 501 - -
Vivi1g08290 702 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 143 - -
Vivi1g08290 702 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 144 232 - -
Vivi1g08290 702 SUPERFAMILY L domain-like 30 215 - -
Vivi1g08290 702 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Vivi1g08290 702 Gene3D Ribonuclease Inhibitor 31 242 IPR032675 -
Vivi1g08290 702 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08290 Vivi-Chr1 237723705 237728668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08290 20 699 Strubbelig Receptor Gene Family AT4G03390 50.465 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vivi1g08290 PK_Tyr_Ser-Thr 7.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08290 - - gmx:100793423 954.125