Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08289 ATGTGTTTTGGCTTCAAAGGTGGAAGCTTTTTATCTTTTGAGAAAATGGGGTTTTCGAAATCGGAGTTGCATGTGCCAATTTTTGTTACCTCCATGATTGTGATTCTAATGGGAAGTTTCTGTGTTGCAGAAACTGACCCTGTTGATGTTGCAGCACTCAATAGTCTATATGCTGCTATGGAGTCACCGCCTCTTCTAGGGTGGAAGCCTGAGGGAGGGGATCCATGTTTAGAAATTTGGCAAGGTGTGGAATGTGTCTTCACCAACATAACTTCCATACGACTGGTAGGCTTGAATTTGGGTGGAGAGCTCGGCAGTAATTTGGATTTTCCATCCATTATAGAACTTGATCTTAGCAACAACCATATTGGAGGTGCCATTCCGTTCACTTTACCCCCTACTTTAACGAGCTTGTCTCTGGCAAGAAATCGGTTAAATGGAAGCATTCCCGATGCCTTATCCTTATTATCTTTTTTGGCAACCTTGGATTTGGCCGATAACAACTTGACCGGCGAGCTTCCTTCATCAATGGGGAGTTTATCATCTCTTACAGCTTTACGGTTGCAGAACAATCAACTCGGAGGGACCCTTTTAGTTTTGCAAGACCTTCCACTCGAGGAATTGAATATCGAGAATAATTTATTCTCCGGGCCAATTCCTCCGAACGTGTTGAACATCCCTAATTTGAAAAAAGACGGGAATCCGTTTAATACTTCTATTATTCCGACGCTGCCTGCTTTAGCCCCCTCACCTGAAGTTACCGGTCTATCTCCCGAAGAATCACCCTGGCATGTGGTTTATAGTCCTTCTGACTTCCCATCACCGTCGCCTGGAAATGTTAAGAAGTCTTTCCTAGCAAAGCACGGCTTTTGGATTGCCGGTGCCGGTGTATTAATATTTATCGCTTTGGGAATTTGTGTTTGTACAGCGTGGTGCTGTAAGAGAAACCCGAAAGATAAAAACTCTCAGAAGCTTGATGTGGAGGCTTTTCCAAATACTTTGCATAAACCTACTCACAATGACGCAGCTGAGAAAACATCGCGTTTCAATGAAGTTCCAAATAGGAGAACGAATTCGGTTCCAAAGGTTCAGGATGAACAAGATCGTTATGTCAACACTGTATCTGCAACTTCGGAATACAATAATGTTTCCAAACCTCCGCTCCTGCAGCCACCACCACATCCTCTGCCAATAGTTCCCGTTGAGAAGGTCACTGTCAATTCCGCAGTAACTACCAATGCCACTGAACGAAAAATCATGACAAGTTCCGTCAAAATGTATACCGTTGCATCACTTCAACAATATACAAATAGCTTTTCCCAAGAAAATCTTATTGGTGAAGGCACTCTCGGATCTGTATATAGAGCCGAGCTCCCTGATGGAAAGCTATTGGCGGTGAAGAAACTGGACACTAGAGCTTTCAAGGACCAGACCGACGAACAGTTTCTTCAATTGGTATCTAGCATCTCAAAAATCCAGCATGTTAATATTGCAAAGCTTGTCGGCTACTGTGCTGAGTATAATCAACGATTACTTATATACGAGTATTGTAATAACGGAACCCTACAAGATGCACTTCACGGTGATGATGAACACTGTATTAAATTTCCATGGAATGAACGCATTAAGGTCGCACTTGGTGCTGCAAGGGCTTTAGAGTATCTGCATGAGAATTTCCAGCCGCCCATTGTACATCGGAATTTTCGGTCTGCTAATGTTCTCCTGAATGAAAAGTCGGAAGTGTGTGTCTCTGATTGTGGATTAGGTCATTTGCTATCTTCTGGCGCCGTTGGCCAGTTATCTGGACGCCTCCTCACAGCTTACGGTTACAGTGCTCCAGAATTTGAGTCTGGAAGTTATACACAGCAAAGTGATGTGTTTAGTTTCGGGGTTGTAATGCTAGAACTTCTCACGGGAAGAAAATCGCACGACAGGTCACGGCCTCGCGGAGAGCAGTTTTTGGTGAGATGGGCAGTACCTCAACTGCATGACATTGATGCATTGTCGAAAATGGTTGACCCTCACTTAAATGGATCATATTCTATGAAGTCCTTGTCGCGTTTTGCAGATATTGTTTCGTCGTGTATTCAGCGTGAACCTGAATTCCGGCCAGCTATGTCTGAAATTGTTCAGGATCTCTTGCTAACGATGTAG 2154 0.4373 MCFGFKGGSFLSFEKMGFSKSELHVPIFVTSMIVILMGSFCVAETDPVDVAALNSLYAAMESPPLLGWKPEGGDPCLEIWQGVECVFTNITSIRLVGLNLGGELGSNLDFPSIIELDLSNNHIGGAIPFTLPPTLTSLSLARNRLNGSIPDALSLLSFLATLDLADNNLTGELPSSMGSLSSLTALRLQNNQLGGTLLVLQDLPLEELNIENNLFSGPIPPNVLNIPNLKKDGNPFNTSIIPTLPALAPSPEVTGLSPEESPWHVVYSPSDFPSPSPGNVKKSFLAKHGFWIAGAGVLIFIALGICVCTAWCCKRNPKDKNSQKLDVEAFPNTLHKPTHNDAAEKTSRFNEVPNRRTNSVPKVQDEQDRYVNTVSATSEYNNVSKPPLLQPPPHPLPIVPVEKVTVNSAVTTNATERKIMTSSVKMYTVASLQQYTNSFSQENLIGEGTLGSVYRAELPDGKLLAVKKLDTRAFKDQTDEQFLQLVSSISKIQHVNIAKLVGYCAEYNQRLLIYEYCNNGTLQDALHGDDEHCIKFPWNERIKVALGAARALEYLHENFQPPIVHRNFRSANVLLNEKSEVCVSDCGLGHLLSSGAVGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSHDRSRPRGEQFLVRWAVPQLHDIDALSKMVDPHLNGSYSMKSLSRFADIVSSCIQREPEFRPAMSEIVQDLLLTM 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08289 717 Pfam Leucine rich repeat 133 193 IPR001611 GO:0005515
Vivi1g08289 717 Gene3D Transferase(Phosphotransferase) domain 1 517 715 - -
Vivi1g08289 717 Pfam Leucine rich repeat N-terminal domain 49 85 IPR013210 -
Vivi1g08289 717 ProSiteProfiles Protein kinase domain profile. 439 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08289 717 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 35 713 IPR046959 -
Vivi1g08289 717 SUPERFAMILY Protein kinase-like (PK-like) 418 714 IPR011009 -
Vivi1g08289 717 Pfam Protein tyrosine and serine/threonine kinase 442 713 IPR001245 GO:0004672|GO:0006468
Vivi1g08289 717 Gene3D Phosphorylase Kinase; domain 1 401 516 - -
Vivi1g08289 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 46 158 - -
Vivi1g08289 717 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 404 516 - -
Vivi1g08289 717 Gene3D Ribonuclease Inhibitor 46 257 IPR032675 -
Vivi1g08289 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 517 717 - -
Vivi1g08289 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 159 247 - -
Vivi1g08289 717 SUPERFAMILY L domain-like 45 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08289 Vivi-Chr1 237723587 237728668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08289 35 714 Strubbelig Receptor Gene Family AT4G03390 50.465 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vivi1g08289 PK_Tyr_Ser-Thr 8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08289 - - gmx:100793423 954.125