Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08279 ATGGCGGATGATGAATTTCAATTTCCAACACTGTTTGGGGAGGATGGAGATGAATCAGATGACGAGAAGCTTGCAATGGATATCGAGTCTTTTCTCAGCGTTCTTGATGAGGATTGTGATCCTTCTGAGAATAGTCACGAGGATTCTTCATTGAAAGACGTTTCACCTGGTGAATCTGGGACCCATGATAATTTTTTACTTCACAATGGGAATTCTTCCATGCTTGACTACGAACATGAAAACCAAGGACCTTCATCACAGACCTGCTATTCCCCAAATGCTTTTGCTGGTGGTTACAGGGACTCATTCTCTGTTGTGGAAAGTGATGTAACTTTCTATGCAGAAAGGGCAGGAGTTTCTGAACGTGAGATGCCTTTTTACAGTACAGACACTAGTTTCGCTGAAGCAAATTCAAATGCCGTAACTGTTTGTAGAGATAATTTGAACTCAAGTCTGTGGAAGGGTCACGATACTAGCCAAATCAAGCATGTGGCAGATGATGTAGAATCTGAATATGCTTCTCACAGCTCTATCATTGAGAATGTTGATGGAACTTTTGCAAATTATGGAACAGCTTTGAAAGACATTATTGGAGTTTCTAAGCAGCAGGAAAATGACTCATGCACAACTTCTGAAATGCCGTCTGTGGATGTTGACATGCCCACACATTTTGGAACTTCAACTGATTCTACTTTTTGTCAAGGTTCCGATGCTCCTAGTGATTTTAGTGGCTACTATCCATCTTTGAATTGTTACCAGGGTATAGATGTTAGACCTGTTGTTACTGATAGTTCTGCTTATTTTCCTAATGGTGTTTATCCTGAATTCTGGAAAAATGAAGAGACAACAATGGACATGAAGGTTGAAAAAATGGAGTTCTTAACTGATTCTGCAAATATGATTGGCGGCATGCATTTGAATACGGTTAGTCCAACCCCTTTTCAGGACAGGCAATTTATGCCAACAGATAGTGAATATCCTTCATTTTTTTCTGGTAATGTTATATTTGAAGACCGTGAATCAGTGCAACAATCATCTTGTGCTCCGTATATTTCTTGTGAAGGCCAGTCATTTAATGTCAAAGCTGAAGGAGATGAAATGGGTATGCCTTTCCAAAATACTTTTCACAATGACCATGCTGAGTTAAATGCTGGTCTTGGGGTGAAACAATTACCTCATATTTTCCCTGCCATTGAATGTCAGAATTATGATTTTTTGAAGGATGAGGATAGTGACACAATCGTAAAATCCGAGGATGGCAATTATTATCAAGATCTTATCGATGAAACTGCTAAACGTTTTCCAGGAAATACAGGAAATTTGAATTTCAGATCCTTAGACAAATCTCTCTCTATTGCCCGGGCATCAATTACCAATGGGAAACAATATAATTGTGGTATGAGTGAACTAGAGAGTAAACCAAGCGAATATAAAAGTATTGATGATTCTCAACTTTCCAGAAGTACTGAGGGATCCAATGACGAAGATGACTGCGATGTTTGCATTATTGAAGAAATCAGTCACCCTGCACCTACAAGTCGATCTGCTGAACTCATTAATTCTCGTAATATGTCACAATCTTCTAGATTTGACTATACTAAACCGTATATGGCGGGAGGCACAAGACCAAAACCACGCGATGAGCAGTACATATTACGAGTTGCATTGCAGGATCTTTCTCAGCCAAAGTCAGAAGTTAGTCCCCCAGATGGGTTGTTGGCTGTTCCCCTTTTACGTCACCAGAGAATTGCTTTATCGTGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCCGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTTCTTTAATACTAAAGGAAAGGCCTCCATTGCTCAAGACATGCAAAAGTGCACAGAAAAGTGTATTAGAAACCTTGGATTTGGATGATGACCCACTTCCTGATAATGGTGAAGTGAAGAAGGAATCTAACGTGTGTCAACAAGATACATCTAACAGAAATGCAATCACAGGTGGGAATTTGTCTGTGCACACAAAAGGAAGGCCATCTGCAGGAACCCTTGTTGTTTGTCCAACTAGTGTCCTGCGACAGTGGGCTGACGAACTGCAAAATAAAGTAACCTGCAAAGCAAATCTCTCTGTGCTTGTGTACCATGGAAGTAGTCGAACCAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTTTGACTACTTATTCAATTGTTAGCCAGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGACGGAGAAAAAGAAACTTACGAAGATCATGCTATGCCGAGTAAGAAAAGGAAATGCCCTGCTAGTTCAAAAAGCAGCAAGAAGAAGGGTTTGGACAGCATGATGCTTGAGGATGCTGCACGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTTGTCCTGGATGAGGCCCAAAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGAGCTAAGCGCAGATGGTGCTTGTCCGGAACTCCAATCCAGAATTCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCTTATGCCGTGTACACATCTTTCTGTTCAACAATCAAGATTCCTATCAGCAGAAATCCATCAAAAGGGTATAGAAAGCTGCAAACTATCTTAAAGACGATCATGTTACGTCGGACAAAAGGCTCACTTCTGGATGGGGAGCCTATTATATCTTTGCCACCTAAATCTGTGGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAAGCTAGAGGCTGATTCACGTGCACAGTTTCAGGAATACGCCGATGCTGGTACTGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCCTGCGACCACCCTCAGCTTGTTAAGCGTTATAATTCTACTACTCTCTGGAAATCTTCTGTTGAGACGGCCATGAAGCTTCCTCGGGAAAAACAGCTATATCTTTTGAAATGTTTAGAGGCTTCCTTGGCTCTCTGTGGTATCTGTAATGATGCTCCTGAAGATGCTGTTGTTTCAGTCTGTGGTCATGTTTTCTGTAACCAGTGCATTTCTGAACATCTAACTGGTGAGGACAATCAGTGCCCTGCTACAAATTGCAAAACTCGACTTAGCATGTCTTCAGTGTTTCCCAAAGCCACACTGAACAGTTCTTTATCTGATCAGTCTTGTGATCTTTTGCTTGGTTGCTCTGGTTCTGAGGTTGAGGATTCTGAACCTTGTTCTCAGACTAAGCTATATAATTCTTCAAAAATAAAAGCTGCACTTGAGGTGTTGCAGTCATTGTCAAAGCCACAATGTCGGACTTCCCAAGAAAATTGTGTGCCAAGCACTTCTAAAGAAAGTACTGATTGCAGCTCCACTTCTGCTGACAGTGGAAAATCTTTTAGTGATGTTCACAAAAAGAAAACTATGTTAAAGGAGAAAAGCTCTAATGGTGCAATTGGTTCTCTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGGGGATGCTTGATTTACTTGAAGCGTGTCTTAAGAATTCTTCAATTCAGTATAGAAGACTTGATGGCACAATGTCTGTCCTTGCAAGAGATAAAGCTGTTAAGGACTTTAACACACTCCCTGAGGTAACAGTTATGATAATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAACATGGTTGCAGCCTGCCATGTTCTCATGCTTGATCTATGGTGGAATCCTACAACTGAAGATCAAGCCATAGACAGAGCACATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGTTTAACTGTCAAAGATACGGTTGAAGACCGTATTTTAGCTCTGCAGGAAAAGAAGCGAAAGATGGTTGCATCTGCGTTTGGAGAGGATGAAACAGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3987 0.4106 MADDEFQFPTLFGEDGDESDDEKLAMDIESFLSVLDEDCDPSENSHEDSSLKDVSPGESGTHDNFLLHNGNSSMLDYEHENQGPSSQTCYSPNAFAGGYRDSFSVVESDVTFYAERAGVSEREMPFYSTDTSFAEANSNAVTVCRDNLNSSLWKGHDTSQIKHVADDVESEYASHSSIIENVDGTFANYGTALKDIIGVSKQQENDSCTTSEMPSVDVDMPTHFGTSTDSTFCQGSDAPSDFSGYYPSLNCYQGIDVRPVVTDSSAYFPNGVYPEFWKNEETTMDMKVEKMEFLTDSANMIGGMHLNTVSPTPFQDRQFMPTDSEYPSFFSGNVIFEDRESVQQSSCAPYISCEGQSFNVKAEGDEMGMPFQNTFHNDHAELNAGLGVKQLPHIFPAIECQNYDFLKDEDSDTIVKSEDGNYYQDLIDETAKRFPGNTGNLNFRSLDKSLSIARASITNGKQYNCGMSELESKPSEYKSIDDSQLSRSTEGSNDEDDCDVCIIEEISHPAPTSRSAELINSRNMSQSSRFDYTKPYMAGGTRPKPRDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTISLILKERPPLLKTCKSAQKSVLETLDLDDDPLPDNGEVKKESNVCQQDTSNRNAITGGNLSVHTKGRPSAGTLVVCPTSVLRQWADELQNKVTCKANLSVLVYHGSSRTKDPYELAKYDVVLTTYSIVSQEVPKQPLVDKDDGEKETYEDHAMPSKKRKCPASSKSSKKKGLDSMMLEDAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQTILKTIMLRRTKGSLLDGEPIISLPPKSVELKKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPQLVKRYNSTTLWKSSVETAMKLPREKQLYLLKCLEASLALCGICNDAPEDAVVSVCGHVFCNQCISEHLTGEDNQCPATNCKTRLSMSSVFPKATLNSSLSDQSCDLLLGCSGSEVEDSEPCSQTKLYNSSKIKAALEVLQSLSKPQCRTSQENCVPSTSKESTDCSSTSADSGKSFSDVHKKKTMLKEKSSNGAIGSLGEKAIVFSQWTGMLDLLEACLKNSSIQYRRLDGTMSVLARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQEKKRKMVASAFGEDETGGRQSRLTVDDLKYLFMM 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08279 1328 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 460 1327 - -
Vivi1g08279 1328 SUPERFAMILY RING/U-box 1011 1070 - -
Vivi1g08279 1328 Gene3D - 913 1327 IPR027417 -
Vivi1g08279 1328 Pfam SNF2-related domain 597 976 IPR000330 GO:0005524|GO:0140658
Vivi1g08279 1328 Pfam Helicase conserved C-terminal domain 1173 1270 IPR001650 -
Vivi1g08279 1328 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 780 910 - -
Vivi1g08279 1328 Gene3D - 670 758 IPR038718 -
Vivi1g08279 1328 Gene3D - 787 899 IPR038718 -
Vivi1g08279 1328 SMART ultradead3 573 875 IPR014001 -
Vivi1g08279 1328 CDD SF2_C_SNF 1168 1280 - -
Vivi1g08279 1328 Gene3D - 549 641 IPR038718 -
Vivi1g08279 1328 MobiDBLite consensus disorder prediction 54 86 - -
Vivi1g08279 1328 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1g08279 1328 MobiDBLite consensus disorder prediction 1123 1150 - -
Vivi1g08279 1328 ProSitePatterns Zinc finger RING-type signature. 1029 1038 IPR017907 -
Vivi1g08279 1328 ProSiteProfiles Zinc finger RING-type profile. 1014 1053 IPR001841 -
Vivi1g08279 1328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1007 1065 IPR013083 -
Vivi1g08279 1328 CDD DEXDc_SHPRH-like 577 898 - -
Vivi1g08279 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 906 1327 IPR027417 -
Vivi1g08279 1328 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 670 757 - -
Vivi1g08279 1328 MobiDBLite consensus disorder prediction 751 773 - -
Vivi1g08279 1328 SMART helicmild6 1187 1270 IPR001650 -
Vivi1g08279 1328 MobiDBLite consensus disorder prediction 643 679 - -
Vivi1g08279 1328 MobiDBLite consensus disorder prediction 465 496 - -
Vivi1g08279 1328 Pfam Zinc finger, C3HC4 type (RING finger) 1014 1050 - -
Vivi1g08279 1328 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1152 1323 IPR001650 -
Vivi1g08279 1328 MobiDBLite consensus disorder prediction 35 86 - -
Vivi1g08279 1328 MobiDBLite consensus disorder prediction 1123 1148 - -
Vivi1g08279 1328 SMART ring_2 1014 1052 IPR001841 -
Vivi1g08279 1328 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 592 860 IPR014001 -
Vivi1g08279 1328 MobiDBLite consensus disorder prediction 656 679 - -
Vivi1g08279 1328 MobiDBLite consensus disorder prediction 750 787 - -
Vivi1g08279 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 898 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08279 Vivi-Chr1 237187625 237197268 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08279 500 1327 RAD5 or RAD16-like Gene Family AT1G61140 63.389 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi1g08279 SNF2_N 6.1e-70 CL0023