Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi1g08279 | ATGGCGGATGATGAATTTCAATTTCCAACACTGTTTGGGGAGGATGGAGATGAATCAGATGACGAGAAGCTTGCAATGGATATCGAGTCTTTTCTCAGCGTTCTTGATGAGGATTGTGATCCTTCTGAGAATAGTCACGAGGATTCTTCATTGAAAGACGTTTCACCTGGTGAATCTGGGACCCATGATAATTTTTTACTTCACAATGGGAATTCTTCCATGCTTGACTACGAACATGAAAACCAAGGACCTTCATCACAGACCTGCTATTCCCCAAATGCTTTTGCTGGTGGTTACAGGGACTCATTCTCTGTTGTGGAAAGTGATGTAACTTTCTATGCAGAAAGGGCAGGAGTTTCTGAACGTGAGATGCCTTTTTACAGTACAGACACTAGTTTCGCTGAAGCAAATTCAAATGCCGTAACTGTTTGTAGAGATAATTTGAACTCAAGTCTGTGGAAGGGTCACGATACTAGCCAAATCAAGCATGTGGCAGATGATGTAGAATCTGAATATGCTTCTCACAGCTCTATCATTGAGAATGTTGATGGAACTTTTGCAAATTATGGAACAGCTTTGAAAGACATTATTGGAGTTTCTAAGCAGCAGGAAAATGACTCATGCACAACTTCTGAAATGCCGTCTGTGGATGTTGACATGCCCACACATTTTGGAACTTCAACTGATTCTACTTTTTGTCAAGGTTCCGATGCTCCTAGTGATTTTAGTGGCTACTATCCATCTTTGAATTGTTACCAGGGTATAGATGTTAGACCTGTTGTTACTGATAGTTCTGCTTATTTTCCTAATGGTGTTTATCCTGAATTCTGGAAAAATGAAGAGACAACAATGGACATGAAGGTTGAAAAAATGGAGTTCTTAACTGATTCTGCAAATATGATTGGCGGCATGCATTTGAATACGGTTAGTCCAACCCCTTTTCAGGACAGGCAATTTATGCCAACAGATAGTGAATATCCTTCATTTTTTTCTGGTAATGTTATATTTGAAGACCGTGAATCAGTGCAACAATCATCTTGTGCTCCGTATATTTCTTGTGAAGGCCAGTCATTTAATGTCAAAGCTGAAGGAGATGAAATGGGTATGCCTTTCCAAAATACTTTTCACAATGACCATGCTGAGTTAAATGCTGGTCTTGGGGTGAAACAATTACCTCATATTTTCCCTGCCATTGAATGTCAGAATTATGATTTTTTGAAGGATGAGGATAGTGACACAATCGTAAAATCCGAGGATGGCAATTATTATCAAGATCTTATCGATGAAACTGCTAAACGTTTTCCAGGAAATACAGGAAATTTGAATTTCAGATCCTTAGACAAATCTCTCTCTATTGCCCGGGCATCAATTACCAATGGGAAACAATATAATTGTGGTATGAGTGAACTAGAGAGTAAACCAAGCGAATATAAAAGTATTGATGATTCTCAACTTTCCAGAAGTACTGAGGGATCCAATGACGAAGATGACTGCGATGTTTGCATTATTGAAGAAATCAGTCACCCTGCACCTACAAGTCGATCTGCTGAACTCATTAATTCTCGTAATATGTCACAATCTTCTAGATTTGACTATACTAAACCGTATATGGCGGGAGGCACAAGACCAAAACCACGCGATGAGCAGTACATATTACGAGTTGCATTGCAGGATCTTTCTCAGCCAAAGTCAGAAGTTAGTCCCCCAGATGGGTTGTTGGCTGTTCCCCTTTTACGTCACCAGAGAATTGCTTTATCGTGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCCGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTTCTTTAATACTAAAGGAAAGGCCTCCATTGCTCAAGACATGCAAAAGTGCACAGAAAAGTGTATTAGAAACCTTGGATTTGGATGATGACCCACTTCCTGATAATGGTGAAGTGAAGAAGGAATCTAACGTGTGTCAACAAGATACATCTAACAGAAATGCAATCACAGGTGGGAATTTGTCTGTGCACACAAAAGGAAGGCCATCTGCAGGAACCCTTGTTGTTTGTCCAACTAGTGTCCTGCGACAGTGGGCTGACGAACTGCAAAATAAAGTAACCTGCAAAGCAAATCTCTCTGTGCTTGTGTACCATGGAAGTAGTCGAACCAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTTTGACTACTTATTCAATTGTTAGCCAGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGACGGAGAAAAAGAAACTTACGAAGATCATGCTATGCCGAGTAAGAAAAGGAAATGCCCTGCTAGTTCAAAAAGCAGCAAGAAGAAGGGTTTGGACAGCATGATGCTTGAGGATGCTGCACGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTTGTCCTGGATGAGGCCCAAAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGAGCTAAGCGCAGATGGTGCTTGTCCGGAACTCCAATCCAGAATTCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCTTATGCCGTGTACACATCTTTCTGTTCAACAATCAAGATTCCTATCAGCAGAAATCCATCAAAAGGGTATAGAAAGCTGCAAACTATCTTAAAGACGATCATGTTACGTCGGACAAAAGGCTCACTTCTGGATGGGGAGCCTATTATATCTTTGCCACCTAAATCTGTGGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAAGCTAGAGGCTGATTCACGTGCACAGTTTCAGGAATACGCCGATGCTGGTACTGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCCTGCGACCACCCTCAGCTTGTTAAGCGTTATAATTCTACTACTCTCTGGAAATCTTCTGTTGAGACGGCCATGAAGCTTCCTCGGGAAAAACAGCTATATCTTTTGAAATGTTTAGAGGCTTCCTTGGCTCTCTGTGGTATCTGTAATGATGCTCCTGAAGATGCTGTTGTTTCAGTCTGTGGTCATGTTTTCTGTAACCAGTGCATTTCTGAACATCTAACTGGTGAGGACAATCAGTGCCCTGCTACAAATTGCAAAACTCGACTTAGCATGTCTTCAGTGTTTCCCAAAGCCACACTGAACAGTTCTTTATCTGATCAGTCTTGTGATCTTTTGCTTGGTTGCTCTGGTTCTGAGGTTGAGGATTCTGAACCTTGTTCTCAGACTAAGCTATATAATTCTTCAAAAATAAAAGCTGCACTTGAGGTGTTGCAGTCATTGTCAAAGCCACAATGTCGGACTTCCCAAGAAAATTGTGTGCCAAGCACTTCTAAAGAAAGTACTGATTGCAGCTCCACTTCTGCTGACAGTGGAAAATCTTTTAGTGATGTTCACAAAAAGAAAACTATGTTAAAGGAGAAAAGCTCTAATGGTGCAATTGGTTCTCTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGGGGATGCTTGATTTACTTGAAGCGTGTCTTAAGAATTCTTCAATTCAGTATAGAAGACTTGATGGCACAATGTCTGTCCTTGCAAGAGATAAAGCTGTTAAGGACTTTAACACACTCCCTGAGGTAACAGTTATGATAATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAACATGGTTGCAGCCTGCCATGTTCTCATGCTTGATCTATGGTGGAATCCTACAACTGAAGATCAAGCCATAGACAGAGCACATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGTTTAACTGTCAAAGATACGGTTGAAGACCGTATTTTAGCTCTGCAGGAAAAGAAGCGAAAGATGGTTGCATCTGCGTTTGGAGAGGATGAAACAGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA | 3987 | 0.4106 | MADDEFQFPTLFGEDGDESDDEKLAMDIESFLSVLDEDCDPSENSHEDSSLKDVSPGESGTHDNFLLHNGNSSMLDYEHENQGPSSQTCYSPNAFAGGYRDSFSVVESDVTFYAERAGVSEREMPFYSTDTSFAEANSNAVTVCRDNLNSSLWKGHDTSQIKHVADDVESEYASHSSIIENVDGTFANYGTALKDIIGVSKQQENDSCTTSEMPSVDVDMPTHFGTSTDSTFCQGSDAPSDFSGYYPSLNCYQGIDVRPVVTDSSAYFPNGVYPEFWKNEETTMDMKVEKMEFLTDSANMIGGMHLNTVSPTPFQDRQFMPTDSEYPSFFSGNVIFEDRESVQQSSCAPYISCEGQSFNVKAEGDEMGMPFQNTFHNDHAELNAGLGVKQLPHIFPAIECQNYDFLKDEDSDTIVKSEDGNYYQDLIDETAKRFPGNTGNLNFRSLDKSLSIARASITNGKQYNCGMSELESKPSEYKSIDDSQLSRSTEGSNDEDDCDVCIIEEISHPAPTSRSAELINSRNMSQSSRFDYTKPYMAGGTRPKPRDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTISLILKERPPLLKTCKSAQKSVLETLDLDDDPLPDNGEVKKESNVCQQDTSNRNAITGGNLSVHTKGRPSAGTLVVCPTSVLRQWADELQNKVTCKANLSVLVYHGSSRTKDPYELAKYDVVLTTYSIVSQEVPKQPLVDKDDGEKETYEDHAMPSKKRKCPASSKSSKKKGLDSMMLEDAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQTILKTIMLRRTKGSLLDGEPIISLPPKSVELKKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPQLVKRYNSTTLWKSSVETAMKLPREKQLYLLKCLEASLALCGICNDAPEDAVVSVCGHVFCNQCISEHLTGEDNQCPATNCKTRLSMSSVFPKATLNSSLSDQSCDLLLGCSGSEVEDSEPCSQTKLYNSSKIKAALEVLQSLSKPQCRTSQENCVPSTSKESTDCSSTSADSGKSFSDVHKKKTMLKEKSSNGAIGSLGEKAIVFSQWTGMLDLLEACLKNSSIQYRRLDGTMSVLARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQEKKRKMVASAFGEDETGGRQSRLTVDDLKYLFMM | 1328 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi1g08279 | 1328 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 460 | 1327 | - | - | |
Vivi1g08279 | 1328 | SUPERFAMILY | RING/U-box | 1011 | 1070 | - | - | |
Vivi1g08279 | 1328 | Gene3D | - | 913 | 1327 | IPR027417 | - | |
Vivi1g08279 | 1328 | Pfam | SNF2-related domain | 597 | 976 | IPR000330 | GO:0005524|GO:0140658 | |
Vivi1g08279 | 1328 | Pfam | Helicase conserved C-terminal domain | 1173 | 1270 | IPR001650 | - | |
Vivi1g08279 | 1328 | FunFam | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein | 780 | 910 | - | - | |
Vivi1g08279 | 1328 | Gene3D | - | 670 | 758 | IPR038718 | - | |
Vivi1g08279 | 1328 | Gene3D | - | 787 | 899 | IPR038718 | - | |
Vivi1g08279 | 1328 | SMART | ultradead3 | 573 | 875 | IPR014001 | - | |
Vivi1g08279 | 1328 | CDD | SF2_C_SNF | 1168 | 1280 | - | - | |
Vivi1g08279 | 1328 | Gene3D | - | 549 | 641 | IPR038718 | - | |
Vivi1g08279 | 1328 | MobiDBLite | consensus disorder prediction | 54 | 86 | - | - | |
Vivi1g08279 | 1328 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Vivi1g08279 | 1328 | MobiDBLite | consensus disorder prediction | 1123 | 1150 | - | - | |
Vivi1g08279 | 1328 | ProSitePatterns | Zinc finger RING-type signature. | 1029 | 1038 | IPR017907 | - | |
Vivi1g08279 | 1328 | ProSiteProfiles | Zinc finger RING-type profile. | 1014 | 1053 | IPR001841 | - | |
Vivi1g08279 | 1328 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1007 | 1065 | IPR013083 | - | |
Vivi1g08279 | 1328 | CDD | DEXDc_SHPRH-like | 577 | 898 | - | - | |
Vivi1g08279 | 1328 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 906 | 1327 | IPR027417 | - | |
Vivi1g08279 | 1328 | FunFam | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein | 670 | 757 | - | - | |
Vivi1g08279 | 1328 | MobiDBLite | consensus disorder prediction | 751 | 773 | - | - | |
Vivi1g08279 | 1328 | SMART | helicmild6 | 1187 | 1270 | IPR001650 | - | |
Vivi1g08279 | 1328 | MobiDBLite | consensus disorder prediction | 643 | 679 | - | - | |
Vivi1g08279 | 1328 | MobiDBLite | consensus disorder prediction | 465 | 496 | - | - | |
Vivi1g08279 | 1328 | Pfam | Zinc finger, C3HC4 type (RING finger) | 1014 | 1050 | - | - | |
Vivi1g08279 | 1328 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1152 | 1323 | IPR001650 | - | |
Vivi1g08279 | 1328 | MobiDBLite | consensus disorder prediction | 35 | 86 | - | - | |
Vivi1g08279 | 1328 | MobiDBLite | consensus disorder prediction | 1123 | 1148 | - | - | |
Vivi1g08279 | 1328 | SMART | ring_2 | 1014 | 1052 | IPR001841 | - | |
Vivi1g08279 | 1328 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 592 | 860 | IPR014001 | - | |
Vivi1g08279 | 1328 | MobiDBLite | consensus disorder prediction | 656 | 679 | - | - | |
Vivi1g08279 | 1328 | MobiDBLite | consensus disorder prediction | 750 | 787 | - | - | |
Vivi1g08279 | 1328 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 561 | 898 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi1g08279 | Vivi-Chr1 | 237187625 | 237197268 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi1g08279 | 500 | 1327 | RAD5 or RAD16-like Gene Family | AT1G61140 | 63.389 | 0.0 | 991 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Vivi1g08279 | SNF2_N | 6.1e-70 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi1g08279 | - | - | gmx:100805307 | 1697.56 |