Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08278 ATGAAATGGTGTGTTTCATCAAAGGATCTGTCTCGGCCAACATCAGAAGTTAATCTCCCAGATGGGCTATTGGCAGTTCCTCTTTTACGTCATCAGAGAATTGCTCTATCGTGGATGGTTAAAAAGGAAACATCAAGTTTACGTTCTTCCGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACTGTGTCAACTATTGCTTTAATACTAAAGGAAAGGTCTCCGTTGCTCGAGACGTGCAACACTGCACAAAATAGTGTATTAGAAATTATGGATTTGGATGATGATCCACTTCCTGAGAATGGTGTAATGACGAAGGAATTTGACGCGCGTCAAGATATATCTAGAAATGGAAAAGCGATCACAAGTGTGAATTCTTCGGTTCATGCAAAAGGCAGGCCATCTGCAGGAACTCTTGTTATTTGTCCAACCAGTGTCCTGCGACAGTGGGCTGACGAACTGGCTAATAAAGTAACATGGAGAGCAAATCTCTCTGTGCTTGTGTACCATGGAAGCAATCGAATCAAAGATCATCATGAGCTTGCCAAGTATGATGTTGTTTTGACTACTTATTCAATTGTTAGCCTAGAGGTCCCTAAAGATGACGGAGAAAAAGAAACTATTGAAGATCGTGCTACGACGAGTAAGAAAAGGAAATGCCCTTCTAGCTCAAAAAGCGGAAAGAAGAAGGATGATGCGGGTCCTCTTGCAAAAGTAGCCTGGTATAGAGTCGTCCTTGATGAGGCCCAAAGTATAAAGAATCACATAACTCTTGTTTCAAAGGCTTGCTGGGGTCTTAGAGCTAAGCGCATATGGTGCTTGTCCGGAACTCCAATCCAGAATTCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATTATCCTTATGATGAGCTCACAACATTCTGTTCAAAAATCAAGGTTCCTATCACCAATAATCCATCAATAGGGTATGTGAAGCTGCAAGCTATCTTAAAAGTGATCATGTTACGTCGGACAAAAGCCACAATTCTTGATGGGGAGCCTATTATATCTTTGCCACCTAAACATGTGAAGTGCAAAAGAGTGAAATTTTCACAGGAGGAACATGACTTCTATTCCAAGCTAGAGACTGATTCACGTGCACAATTTCAGGTACAGAATGTGAAGCAAAACTACGTTCACATTTTATCGATGCTTTTGCGCCTTAGACAAGCTTGCAACCACCCTCAACTTGTTAAGGGTTACAATTCTACTTCTCACTGGACATCTTCAGTTGAGACGACCGTTAAGATTCCTCGGGAAAGACAGCTTATTCTTTTGAAATGTTTAGAGGCTTGCGTGGCTCTTTGTGGTATCTGTAATGATGTTCCTGAAGATGCTGTTGTTTCAGTCTGTGGTCATATTTTCTGTAACCAATGCATTTCCGAACATCTAACTGGTGAGGACATTCAGTGCCCTGCTACAAACTGCAAAACTGAACTTAGCGGGTCTTCAGTGTTTTCCGAAGCCACACTGAACAATTCTTTATCTGATCGGTCTTGTGATCTTTTGCTTGGTACCTCCGGTTCTGAGGTTGAGGATTCTGAACCTTTTTCAAAGACTCGGCCAATTTATTCTTCAAAAATAATAGCTGCACTTAAGGCGTTGCAGTCATTTAATAAGCGGAAATGCCATACTTCCCAAGAAACTTGTATGCTGAACACTTCTAAGGAAAGTACTGCTTGCAACTCCACTTCGTCTTGTGATGTTCCCAAAAAGAAAGCTATAGTGTTTTCTCAGTGGACGGGGATGCTAGATTTTCTTGGTTCCATTCCATGTAAGCTGCATCAAATATTTAAGGAAAAGAAGCGAGAGATGATTGCATCTGCGTTAGGAGAGGATGAAAGTGGTGGTCGTCTTAGTTGTCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 1935 0.4103 MKWCVSSKDLSRPTSEVNLPDGLLAVPLLRHQRIALSWMVKKETSSLRSSGGILADDQGLGKTVSTIALILKERSPLLETCNTAQNSVLEIMDLDDDPLPENGVMTKEFDARQDISRNGKAITSVNSSVHAKGRPSAGTLVICPTSVLRQWADELANKVTWRANLSVLVYHGSNRIKDHHELAKYDVVLTTYSIVSLEVPKDDGEKETIEDRATTSKKRKCPSSSKSGKKKDDAGPLAKVAWYRVVLDEAQSIKNHITLVSKACWGLRAKRIWCLSGTPIQNSIDDLYSYFRFLRYYPYDELTTFCSKIKVPITNNPSIGYVKLQAILKVIMLRRTKATILDGEPIISLPPKHVKCKRVKFSQEEHDFYSKLETDSRAQFQVQNVKQNYVHILSMLLRLRQACNHPQLVKGYNSTSHWTSSVETTVKIPRERQLILLKCLEACVALCGICNDVPEDAVVSVCGHIFCNQCISEHLTGEDIQCPATNCKTELSGSSVFSEATLNNSLSDRSCDLLLGTSGSEVEDSEPFSKTRPIYSSKIIAALKALQSFNKRKCHTSQETCMLNTSKESTACNSTSSCDVPKKKAIVFSQWTGMLDFLGSIPCKLHQIFKEKKREMIASALGEDESGGRLSCLTVDDLKYLFMM 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08278 644 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 213 347 - -
Vivi1g08278 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 598 IPR027417 -
Vivi1g08278 644 ProSitePatterns Zinc finger RING-type signature. 462 471 IPR017907 -
Vivi1g08278 644 MobiDBLite consensus disorder prediction 205 233 - -
Vivi1g08278 644 CDD DEXDc_SHPRH-like 28 335 - -
Vivi1g08278 644 SMART ring_2 447 485 IPR001841 -
Vivi1g08278 644 SUPERFAMILY RING/U-box 445 515 - -
Vivi1g08278 644 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 43 297 IPR014001 -
Vivi1g08278 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 502 IPR013083 -
Vivi1g08278 644 Pfam Zinc finger, C3HC4 type (RING finger) 447 483 - -
Vivi1g08278 644 Gene3D - 5 91 IPR038718 -
Vivi1g08278 644 SMART ultradead3 24 305 IPR014001 -
Vivi1g08278 644 Gene3D - 347 444 IPR027417 -
Vivi1g08278 644 Pfam SNF2-related domain 41 409 IPR000330 GO:0005524|GO:0140658
Vivi1g08278 644 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 13 599 - -
Vivi1g08278 644 ProSiteProfiles Zinc finger RING-type profile. 447 486 IPR001841 -
Vivi1g08278 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 335 IPR027417 -
Vivi1g08278 644 Gene3D - 118 336 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08278 Vivi-Chr1 237164743 237173698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08278 609 643 RAD5 or RAD16-like Gene Family AT1G61140 65.714 3.98e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi1g08278 SNF2_N 2.7e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08278 - - vvo:131597029 1272.69