Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08256 ATGACAAGTTTCTACCTATTGGGTTTTGTGGTGTTGTTTTTATCTTTGAATTCTAATGTTTCTTCAAGAGATGTTTCTTCTAGAGATGTGAAATGGGCTGTTGATGATAATAGTGATCTTGTGACTAATTTGCCTGGCCAGCCTCCAGTATATTTCAAGCACTATGCTGGATATGTGAACGTCAATGAAACCAATGGAAGATCACTGTTTTATTGGTTTTTCGAAGCTTTGACGGAGCCTGAAAATAAACCATTGCTTCTATGGCTTAATGGAGGACCTGGATGCTCTTCTGTGGGATATGGAGCAACCGAGGAGATTGGCCCATTTTTAGTAGACATTGATGGGAAATGCCTTAAATATAATAATTTCTCATGGAATAGAGAGGCCAACCTGTTATTCCTTGAATCTCCTATTGGTGTTGGATTTTCCTACTCAAATACAACAAGTGAATATCAACATTTAGGAGATGATTTCACAGCTAATGATACTTACACCTTTCTACACAAATGGTTCCTCAAGTTTCCATCATATAGAACAAGGTCATTTTACATTGGAGGGGAGAGCTATGGAGGACATTATGTACCACAACTGGCTCAAGTTATCCTTGATAGGAATAATGAACCTTCCCTTCATATTGATCTCAAGGGAATTTTGGTGGGAAACCCTGAAATTTCCTATGCTGAGGATTGGTGGGGTATGATTGATTATGCATGGAGTCATGCAGTGATATCGGATGAAACTCACAAAATAATAAGAGAAAATTGTCAATTTAACAACACTGATAATACATCAAGTAGCAATGATGTATGCAATAAAGGATTAGATGAAATGTTCAAACAATACAATGAAATTGATATCTATAGTCTCTACACACCTGTTTGTTTAGCTGATAAGGGGGTTTCAAAACCCATGCAAAAGGTTATGAAGCTTTCATCAAACAAAGATATGATACCAAGGATAATGGGTGGTTATGACCCATGTATTGATCACTATGCTACTACATATTTTAATATACCTGAAGTTCAAAAGGCTCTTCATGCAAGTGATGGTCACAATCTCAAGAATTGGAGTATTTGCAATGATTTCGTATTCAACAACTGGGAACAATCAGCACGAACTGTTATCCCAGTTTACAGCAAGCTTATTTCAGCAGGATTAAGGGTTTGGATTTACAGTGGAGACACTGATGGTAGAGTACCAGTATTGTCAACTAGATACAGCATAAATCTTCTTGGTTTGCCGATCACCAAGCCATGGAATCCTTGGTACAATGAAAAGGAGGTTAGTGGATGGTATCAAGAATATAAGGGACTTACATTTGCTACATTTAGAGGAGCTGGCCATGATGTACCTACTTTCAAACCAAGCAATTCACTTGTGTTCTTCACATCTTTTCTTTTGGGAGAATCACTACCTTCTAAAAGATAA 1428 0.3732 MTSFYLLGFVVLFLSLNSNVSSRDVSSRDVKWAVDDNSDLVTNLPGQPPVYFKHYAGYVNVNETNGRSLFYWFFEALTEPENKPLLLWLNGGPGCSSVGYGATEEIGPFLVDIDGKCLKYNNFSWNREANLLFLESPIGVGFSYSNTTSEYQHLGDDFTANDTYTFLHKWFLKFPSYRTRSFYIGGESYGGHYVPQLAQVILDRNNEPSLHIDLKGILVGNPEISYAEDWWGMIDYAWSHAVISDETHKIIRENCQFNNTDNTSSSNDVCNKGLDEMFKQYNEIDIYSLYTPVCLADKGVSKPMQKVMKLSSNKDMIPRIMGGYDPCIDHYATTYFNIPEVQKALHASDGHNLKNWSICNDFVFNNWEQSARTVIPVYSKLISAGLRVWIYSGDTDGRVPVLSTRYSINLLGLPITKPWNPWYNEKEVSGWYQEYKGLTFATFRGAGHDVPTFKPSNSLVFFTSFLLGESLPSKR 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08256 475 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 40 455 IPR001563 GO:0004185|GO:0006508
Vivi1g08256 475 Gene3D - 374 468 - -
Vivi1g08256 475 FunFam Carboxypeptidase 35 296 - -
Vivi1g08256 475 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185
Vivi1g08256 475 Gene3D - 327 363 - -
Vivi1g08256 475 SUPERFAMILY alpha/beta-Hydrolases 41 471 IPR029058 -
Vivi1g08256 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Vivi1g08256 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Vivi1g08256 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Vivi1g08256 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 438 451 IPR001563 GO:0004185|GO:0006508
Vivi1g08256 475 Gene3D alpha/beta hydrolase 35 296 IPR029058 -
Vivi1g08256 475 FunFam Carboxypeptidase 374 468 - -
Vivi1g08256 475 Pfam Serine carboxypeptidase 46 466 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08256 Vivi-Chr1 235338025 235341712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08256 332 471 Calmodulin-binding Proteins AT2G22960 31.206 1.82e-14 70.1