Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08250 ATGTCTGACACCGAAAATCACGCGCATCACGGTGCTTCTTCCCCCGACAAGCCAAGTTCCCGGGGATCTGGTCACGAGAGCACGAGGATGAGAAGGAGAGATGGAGACAGGAAAAATTTTCATGACAACCGTGACCGTCACAGAGATGATAAATACGAGGGTTTTAGAGGAAGAGGCAGATATGACAGTTATAATCGTCAACGCGGCCGTGATTATGATAGGCATAATGACTATGATCGTGATAGAGATGCAAGACACAGATATGGGGCACATTCAAAGAGATCCAGGAGGGAATCTAGATCTAGATCACGGTCCAGATCCCCTTCTCAATCAGAAGGAAAAAGGACCTCTGGTTTTGACATGGCACCACCTGCTACGGGTGTAACACCAGCTGTTTCAGGGCAAATGCCGGGGATTGCTCATACAATTCAAGGAGCTACACAAAATTTCTCACCATATGGGATATCACAGATTGGAGCTCTTTCCTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCACGCTCGGCGAGTGTACGTTGGTGGGCTCCCTCCTTTTGCTAACGAGCAGGCAATTGCATCTTTCTTTAGCCATGTCATGATTGCTATTGGGGGAAATTCTGCTGGATCAGGTGATTCGGTTGTCAATGTCTACATTAATCACGAGAAGAAATTTGCGTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCTTTAGATGGAATAGTATTTGAGGGTGTTTCTGTGAGAGTTCGTAGGCCAACTGACTATAACCCTTCATTAGCTGCAGTTCTAGGTCCTTGCCAGCCAAGTGCAAACCTCAACTTATCTGCTGTTGGACTTTCTGCAGGTTCAATTGGTGGAGCCGAGGGACTTGATCGCATCTTTGTGGGTGGGCTGCCATACTACTTTACTGAAGCACAAATGAGAGAATTGCTTCAAGCTTTTGGCCCTCTCCGAAATTTTGATATAGTTAGAGATAAAGAAACGGGAAACTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCAGTAACAGACATTGCTTGTGCCTCTCTTAATGGCCTTAAAATGGGAGATAAAACATTGACTGTAAGGCGTGCTACCGTCAGTGGACATTCTAAACCAGAAGAGGATAACATCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAATAGCGTTGGAAGTGGTTGGGCTAAATATTCCAGGGGTCGAAAGAGGCCCAACAAATGAAGAAAGCCCCACTAAAGTTGTATGTTTAACTCAGGCCGTCACTACCGAACAATTAAATGATAATGGGGAATATGAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACGTTGGTGAATGTTGTTATTCCTCGTCCAAATCCAAACGGAGAGCTGTCTGCAGGTATTGGAAAGGTTTTCTTGGAATACGCCGACTGTACTGCTTCTTTAGCTGCAAAAAATGCTCTAAATGGCAGGAAATTTGGGGGTAATATTGTGACTGCTGTTTACTATCCAGAAGAAAATTATCATAATATGGAGTATGATTTATAA 1578 0.4423 MSDTENHAHHGASSPDKPSSRGSGHESTRMRRRDGDRKNFHDNRDRHRDDKYEGFRGRGRYDSYNRQRGRDYDRHNDYDRDRDARHRYGAHSKRSRRESRSRSRSRSPSQSEGKRTSGFDMAPPATGVTPAVSGQMPGIAHTIQGATQNFSPYGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPFANEQAIASFFSHVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVSVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGSIGGAEGLDRIFVGGLPYYFTEAQMRELLQAFGPLRNFDIVRDKETGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKPEEDNIFARAQQHIAMQKIALEVVGLNIPGVERGPTNEESPTKVVCLTQAVTTEQLNDNGEYEEILEDMRDECCKFGTLVNVVIPRPNPNGELSAGIGKVFLEYADCTASLAAKNALNGRKFGGNIVTAVYYPEENYHNMEYDL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08250 525 Gene3D - 292 394 IPR012677 -
Vivi1g08250 525 MobiDBLite consensus disorder prediction 1 133 - -
Vivi1g08250 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 369 IPR000504 GO:0003723
Vivi1g08250 525 MobiDBLite consensus disorder prediction 22 88 - -
Vivi1g08250 525 SMART rrm1_1 299 372 IPR000504 GO:0003723
Vivi1g08250 525 SMART rrm1_1 431 511 IPR000504 GO:0003723
Vivi1g08250 525 SMART rrm1_1 179 257 IPR000504 GO:0003723
Vivi1g08250 525 FunFam U2 snRNP auxiliary factor large subunit 173 274 - -
Vivi1g08250 525 CDD RRM1_U2AF65 177 259 - -
Vivi1g08250 525 Gene3D - 419 524 IPR012677 -
Vivi1g08250 525 Gene3D - 173 271 IPR012677 -
Vivi1g08250 525 PANTHER RNA-BINDING PROTEIN 19 523 - -
Vivi1g08250 525 SUPERFAMILY RNA-binding domain, RBD 299 517 IPR035979 GO:0003676
Vivi1g08250 525 CDD RRM3_U2AF65 423 511 - -
Vivi1g08250 525 SUPERFAMILY RNA-binding domain, RBD 178 263 IPR035979 GO:0003676
Vivi1g08250 525 CDD RRM2_U2AF65 298 374 - -
Vivi1g08250 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
Vivi1g08250 525 FunFam U2 snRNP auxiliary factor large subunit 420 524 - -
Vivi1g08250 525 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 21 523 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vivi1g08250 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 261 IPR000504 GO:0003723
Vivi1g08250 525 FunFam U2 snRNP auxiliary factor large subunit 275 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08250 Vivi-Chr1 235179617 235190154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08250 292 374 Eukaryotic Initiation Factors Gene Family AT1G71770 25.301 2.08e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08250 K12837 - qsa:O6P43_031823 670.233