Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08247 ATGTTGGGCTGCATGTCCTACCAACCTACCTATCAGCGTACACCTTGTAGCATATTCAATGGCTGGCTTGTACATTCTGTTGCCGGACCTTTCACTCTCATCTGGCAAAAGTTGCCTATTGGGCAAATGCCGGGGATTGCTCATACAATTCAAGGAGCTACACAAAATTTCTCACCATATGGGATATCACAGATTGGAGCTCTTTCCTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCACGCTCGGCGAGTGTACGTTGGTGGGCTCCCTCCTTTTGCTAACGAGCAGGCAATTGCATCTTTCTTTAGCCATGTCATGATTGCTATTGGGGGAAATTCTGCTGGATCAGGTGATTCGGTTGTCAATGTCTACATTAATCACGAGAAGAAATTTGCGTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCTTTAGATGGAATAGTATTTGAGGGTGTTTCTGTGAGAGTTCGTAGGCCAACTGACTATAACCCTTCATTAGCTGCAGTTCTAGGTCCTTGCCAGCCAAGTGCAAACCTCAACTTATCTGCTGTTGGACTTTCTGCAGGTTCAATTGGTGGAGCCGAGGGACTTGATCGCATCTTTGTGGGTGGGCTGCCATACTACTTTACTGAAGCACAAATGAGAGAATTGCTTCAAGCTTTTGGCCCTCTCCGAAATTTTGATATAGTTAGAGATAAAGAAACGGGAAACTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCAGTAACAGACATTGCTTGTGCCTCTCTTAATGGCCTTAAAATGGGAGATAAAACATTGACTGTAAGGCGTGCTACCGTCAGTGGACATTCTAAACCAGAAGAGGATAACATCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAATAGCGTTGGAAGTGGTTGGGCTAAATATTCCAGGGGTCGAAAGAGGCCCAACAAATGAAGAAAGCCCCACTAAAGTTGTATGTTTAACTCAGGCCGTCACTACCGAACAATTAAATGATAATGGGGAATATGAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACGTTGGTGAATGTTGTTATTCCTCGTCCAAATCCAAACGGAGAGCTGTCTGCAGGTATTGGAAAGGTTTTCTTGGAATACGCCGACTGTACTGCTTCTTTAGCTGCAAAAAATGCTCTAAATGGCAGGAAATTTGGGGGTAATATTGTGACTGCTGTTTACTATCCAGAAGAAAATTATCATAATATGGAGTATGATTTATAA 1299 0.4334 MLGCMSYQPTYQRTPCSIFNGWLVHSVAGPFTLIWQKLPIGQMPGIAHTIQGATQNFSPYGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPFANEQAIASFFSHVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVSVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGSIGGAEGLDRIFVGGLPYYFTEAQMRELLQAFGPLRNFDIVRDKETGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKPEEDNIFARAQQHIAMQKIALEVVGLNIPGVERGPTNEESPTKVVCLTQAVTTEQLNDNGEYEEILEDMRDECCKFGTLVNVVIPRPNPNGELSAGIGKVFLEYADCTASLAAKNALNGRKFGGNIVTAVYYPEENYHNMEYDL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08247 432 SUPERFAMILY RNA-binding domain, RBD 85 170 IPR035979 GO:0003676
Vivi1g08247 432 SMART rrm1_1 338 418 IPR000504 GO:0003723
Vivi1g08247 432 SMART rrm1_1 86 164 IPR000504 GO:0003723
Vivi1g08247 432 SMART rrm1_1 206 279 IPR000504 GO:0003723
Vivi1g08247 432 CDD RRM2_U2AF65 205 281 - -
Vivi1g08247 432 Gene3D - 326 431 IPR012677 -
Vivi1g08247 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Vivi1g08247 432 PANTHER RNA-BINDING PROTEIN 48 430 - -
Vivi1g08247 432 SUPERFAMILY RNA-binding domain, RBD 206 424 IPR035979 GO:0003676
Vivi1g08247 432 FunFam U2 snRNP auxiliary factor large subunit 327 431 - -
Vivi1g08247 432 FunFam U2 snRNP auxiliary factor large subunit 182 294 - -
Vivi1g08247 432 CDD RRM1_U2AF65 84 166 - -
Vivi1g08247 432 CDD RRM3_U2AF65 330 418 - -
Vivi1g08247 432 FunFam U2 snRNP auxiliary factor large subunit 80 181 - -
Vivi1g08247 432 Gene3D - 80 178 IPR012677 -
Vivi1g08247 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 168 IPR000504 GO:0003723
Vivi1g08247 432 Gene3D - 199 301 IPR012677 -
Vivi1g08247 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 276 IPR000504 GO:0003723
Vivi1g08247 432 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 42 430 IPR006529 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08247 Vivi-Chr1 235179599 235187966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08247 199 281 Eukaryotic Initiation Factors Gene Family AT1G71770 25.301 2.48e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08247 K12837 - qsa:O6P43_031823 592.423