Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08229 ATGTACATAAGTGGCGGTTCTTCTTCCATGGGAAGGTCTTTCAAGGAATCTCTTAAACTTCTTGAAGCTGATATTCATCACGCAAATACCTTAGCATCGGATTTTCCTAGAGAATACGATGGTGCGTGCCTTCAGATGAGAATGTCATACAGTCCTGCAGCACACTTGTTTCTGTTTCTGGTACAATGGACAGATTGCAATCTTGCTGGAGCTCTTGGATTGTTAAGAATCCTAATTTACAAGGTGTATGTAGATGGGACAACTACCATGTCAACACATGAAAGAAAAGCAAGTATTAGGGAATTCTATGCGGTCATATATCCGTCTTTAATACAACTTGAAAGAGGTGTCACTGATGCGGAAGATAAAAAGCAGAAGGTTGTATGCATGGAACGGTATCGTAGAAGAGACGACGAGGAGCAAAAGCAATCCTCAGACATAGACCTTGAAAGAGAAGAAGAGTGTGGAATATGTATGGAGATGAATAATAAGATTGTATTGCCCAACTGCAACCATGCCATGTGCCTCAAATGTTACCATGAATGGAGAGCAAGATCACAGTCATGCCCCTTTTGTCGTGACAGTCTTAAAAGAGTGAACTCGGGCGATCTCTGGGTATTCACCGATAGTAGAGACATAGTAGACATGGAAACAGTGACAAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTACCTTTGATCATTCCAGATTCTCTTTTTGACCCTTATGACTCTCACTTAAGATAA 756 0.4087 MYISGGSSSMGRSFKESLKLLEADIHHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLIQLERGVTDAEDKKQKVVCMERYRRRDDEEQKQSSDIDLEREEECGICMEMNNKIVLPNCNHAMCLKCYHEWRARSQSCPFCRDSLKRVNSGDLWVFTDSRDIVDMETVTRENLRRLFMYIDKLPLIIPDSLFDPYDSHLR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08229 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 217 IPR013083 -
Vivi1g08229 251 PANTHER RING FINGER PROTEIN 41, 151 12 249 - -
Vivi1g08229 251 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
Vivi1g08229 251 ProSiteProfiles Zinc finger RING-type profile. 155 193 IPR001841 -
Vivi1g08229 251 SMART ring_2 155 192 IPR001841 -
Vivi1g08229 251 Pfam Zinc finger, C3HC4 type (RING finger) 152 198 - -
Vivi1g08229 251 SUPERFAMILY RING/U-box 143 198 - -
Vivi1g08229 251 FunFam RING/U-box superfamily protein 133 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08229 Vivi-Chr1 234481812 234484258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08229 144 196 C3H Transcription Factor Family AT5G47610 43.103 1.43e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08229 K25840 - vvi:100244841 464.151