Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08224 ATGAGAAGGAGAGATGGAGACAGGAAAGCTTTTCATGATAACCGTGACCGTCACAGAGATGATAAATACGAGGGTTTTAGAGGAAGAGGTAGATATGACGGGTATAATCGTCAACGCGGCCGTGATTATGATAGGCATAATGACTATGATCGTGATAGAGATACAAGGCACAGGTATGGGACACATTCAAAGAGATCCAGGAGGGAATCTAGATCTAGATCACGGTCCAGGTCTCCTTCTCAATCAGAAGGAAAAAGGACCTCTGGTTTTGACATGGCACCACCTGCTACGGGTGTAACACCAGCTGTTTCAGGGCAAATGCCGGGGATTGCTCATACAATTCAAGGAGCTACACAAAATTTCTCACCATATGGGATATCACAGATTGGAGCTCTTTCCTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCACGCTCGGCGAGTGTACGTTGGCGGGCTTCCTCCGTTTGCTAACGAGCAGGCAATTGCATCTTTCTTTAGCCATGTCATGATTGCTATTGGGGGAAATTCTGCTGGATCAGGTGATTCGGTTGTCAACGTCTACATTAATCATGAGAAGAAATTTGCGTTTGTGGAGATGAGAACCGTTGAAGAAGCCAGCAATGCAATGGCTTTAGATGGAATAGTATTTGAGGGTGTTTCTGTGAGAGTTCGTAGGCCAACTGACTATAACCCTTCGTTAGCTGCAGTTCTAGGTCCTTGCCAGCCAAGTGCAAACCTCAATTTATCTGCTGTTGGACTTTCTGCAGGTTCAATTGGTGGAGCTGAGGGGCTTGATCGCATCTTTGTGGGTGGGCTGCCATACTACTTTACTGAAGCACAAATGAGAGAACTGCTTCAAGCTTTTGGTCCTCTCCGAAATTTTGATATAGTTAGAGATAAAGAAACGGGAAACTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCAGTAACAGACATTGCTTGTGCCTCTCTTAATGGCCTTAAAATGGGAGATAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGGACATTCTAAACCAGAAGAGGATAACATCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAATAGCTTTGGAAGTGGTTGGACTAAATATTCCAGGAGTCGAAAGAGGCCCAACAAATGAAGAAAGCCCCACTAAAGTTGTATGTTTAACTCAGGCCGTCACTACTGAACAATTAAATGATAATGGAGAATACGAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACGTTGGTGAATGTTGTTATTCCTCGTCCAAATCCAAACGGAGAACTGTCTGCAGGTATTGGAAAGGTTTTCTTGGAATACGCTGACTGTACTGCTTCTTTAGCTGCAAGAAATGCTCTGAATGGCAGGAAATTTGGGGGTAATATTGTGACGGCTGTTTACTATCCAGAAGAAAATTATCATAGTATGGAGTATGATTTATAA 1491 0.4353 MRRRDGDRKAFHDNRDRHRDDKYEGFRGRGRYDGYNRQRGRDYDRHNDYDRDRDTRHRYGTHSKRSRRESRSRSRSRSPSQSEGKRTSGFDMAPPATGVTPAVSGQMPGIAHTIQGATQNFSPYGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPFANEQAIASFFSHVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVSVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGSIGGAEGLDRIFVGGLPYYFTEAQMRELLQAFGPLRNFDIVRDKETGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKPEEDNIFARAQQHIAMQKIALEVVGLNIPGVERGPTNEESPTKVVCLTQAVTTEQLNDNGEYEEILEDMRDECCKFGTLVNVVIPRPNPNGELSAGIGKVFLEYADCTASLAARNALNGRKFGGNIVTAVYYPEENYHSMEYDL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08224 496 FunFam U2 snRNP auxiliary factor large subunit 246 358 - -
Vivi1g08224 496 SUPERFAMILY RNA-binding domain, RBD 270 488 IPR035979 GO:0003676
Vivi1g08224 496 FunFam U2 snRNP auxiliary factor large subunit 391 495 - -
Vivi1g08224 496 MobiDBLite consensus disorder prediction 1 59 - -
Vivi1g08224 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 232 IPR000504 GO:0003723
Vivi1g08224 496 Gene3D - 144 242 IPR012677 -
Vivi1g08224 496 PANTHER RNA-BINDING PROTEIN 11 494 - -
Vivi1g08224 496 CDD RRM2_U2AF65 269 345 - -
Vivi1g08224 496 Gene3D - 263 365 IPR012677 -
Vivi1g08224 496 CDD RRM1_U2AF65 148 230 - -
Vivi1g08224 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 347 IPR000504 GO:0003723
Vivi1g08224 496 SMART rrm1_1 150 228 IPR000504 GO:0003723
Vivi1g08224 496 SMART rrm1_1 270 343 IPR000504 GO:0003723
Vivi1g08224 496 Gene3D - 390 495 IPR012677 -
Vivi1g08224 496 SUPERFAMILY RNA-binding domain, RBD 41 229 IPR035979 GO:0003676
Vivi1g08224 496 CDD RRM3_U2AF65 394 482 - -
Vivi1g08224 496 FunFam U2 snRNP auxiliary factor large subunit 144 245 - -
Vivi1g08224 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 340 IPR000504 GO:0003723
Vivi1g08224 496 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 2 494 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vivi1g08224 496 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08224 Vivi-Chr1 234392292 234402831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08224 263 345 Eukaryotic Initiation Factors Gene Family AT1G71770 25.301 1.95e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08224 K12837 - qsa:O6P43_031823 665.225