Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08216 ATGAGGTGTAGTAGCTGTTTTGGAACATTGTTTATAAAGAAGGAGAAACAACCTTCTAATTATATTTTTAGTGAAATTGAAGGCTATTCTTTGGATAATCTTAAGCATTTTTCTGATAAGGAATTGAGATTGGCAACTGATAATTATCATTTAAGCAATAAGATTGGAAGAGGAGGTTTTGGTACTGTTTACAAGGGAACATTAAAAAATGGAAGAAAGATAGCAGTGAAGCCTCTTTCTGTTGGATCAAAGCAGGGAGTTAAAGAATTTTTGACCGAAATTACAACCTTATCGAATGTTAAACATTCAAACCTTGTGGAATTGGTTGGATTCTGCATTCAAGGACCGAATCGTACCGTAGTTTACGAGTATGTCGAAAATGGCAACCTTCATACCGCATTACTCAGCAAGAAGAGTTCAAGCATCAAACTAGAGTGGAGAAAAAGATCTGCTATTTGCGTCGGTACGGCAAAAGGTCTTGCGTATCTTCATGAAGAACTTGCACAACATATTGTACATAGAGACATCAAAGCTAGTAATGTACTACTTGACAAAGATTTTAATCCCAAAATTGGCGATTTCGGTATGGCCAAGTTATTTCCAGATGATATCACTCATATCAGCACGAGAATCGCCGGAACAACTGGTTACTTAGCACCAGAATATGCATTAGGTGGACAGTTAACCAAGAAGGCTGATGTATACAGCTTTGGAGTTCTTATACTTGAAATAATTAGTGGCAAAAGCAGCTCAAAAACAAATTGGGATGGATCACATAAATTCCTCTTAGAATGGGCATGGCAACTACATGAAGATGAGAAATGGTTGGATCTAGTAGACCAAGACATGAAAGAATATCCTGAAAAAGAGGTAATCAAGTACATCAAGGTTGCTCTTTTCTGCACACAAGCAGCAGCAAAAAGAAGGCCATTGATGTCACAGGTTGTTGATATGCTCTCTAAGGAAATTCAGCTCAATGAGAAACAACTAACATCACCAGGATTTTTCAATTATGATGTTGGAGAATCCTCTCAAAAGAAATCAAACCCTGAATCTTTAGTTTATCACACTAGTTCTACTCAAGATAGTATTACTCAGGTCACTCCTAGGTGA 1113 0.3711 MRCSSCFGTLFIKKEKQPSNYIFSEIEGYSLDNLKHFSDKELRLATDNYHLSNKIGRGGFGTVYKGTLKNGRKIAVKPLSVGSKQGVKEFLTEITTLSNVKHSNLVELVGFCIQGPNRTVVYEYVENGNLHTALLSKKSSSIKLEWRKRSAICVGTAKGLAYLHEELAQHIVHRDIKASNVLLDKDFNPKIGDFGMAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADVYSFGVLILEIISGKSSSKTNWDGSHKFLLEWAWQLHEDEKWLDLVDQDMKEYPEKEVIKYIKVALFCTQAAAKRRPLMSQVVDMLSKEIQLNEKQLTSPGFFNYDVGESSQKKSNPESLVYHTSSTQDSITQVTPR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08216 370 FunFam Putative LRR receptor-like serine/threonine-protein kinase 125 331 - -
Vivi1g08216 370 SUPERFAMILY Protein kinase-like (PK-like) 30 319 IPR011009 -
Vivi1g08216 370 MobiDBLite consensus disorder prediction 341 370 - -
Vivi1g08216 370 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 24 124 - -
Vivi1g08216 370 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Vivi1g08216 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Vivi1g08216 370 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 350 - -
Vivi1g08216 370 Gene3D Phosphorylase Kinase; domain 1 22 124 - -
Vivi1g08216 370 SMART serkin_6 49 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08216 370 Pfam Protein tyrosine and serine/threonine kinase 50 319 IPR001245 GO:0004672|GO:0006468
Vivi1g08216 370 Gene3D Transferase(Phosphotransferase) domain 1 125 335 - -
Vivi1g08216 370 CDD STKc_IRAK 55 321 - -
Vivi1g08216 370 PIRSF TyrPK_CSF1-R 151 251 - -
Vivi1g08216 370 PIRSF TyrPK_CSF1-R 37 153 - -
Vivi1g08216 370 PIRSF TyrPK_CSF1-R 282 369 - -
Vivi1g08216 370 ProSiteProfiles Protein kinase domain profile. 49 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08216 Vivi-Chr1 234214037 234218455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08216 10 336 Receptor kinase-like Gene Family AT1G56120 50.305 1.92e-107 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g08216 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08216 - - mtr:11430773 651.744