Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08178 ATGGCATTTCAGCAATGTTTTCCGGGTGACATGAAAACCATTCCAACTTCAGTATCAGAAGCGGAAAATTCCAACGGTTGTTTCGACTGCAACATCTGCCTAGACTTCGCGAACGAGCCCGTAGTCACGCTTTGCGGCCACCTATACTGCTGGCCTTGTATCTACAAGTGGCTTCATGTTCAAAGTGATGATTATCTTGGAGTCGATGAACATCCGCAATGTCCTGTGTGCAAAGATAACATATCGCATACAACGATGATACCGTTGTATGGCCGCGGAGGGCAGGCTCCGTCGAGTGAGAAATCGTCATGTTTTAATGATGGTTTTGTACCACCTAGGCCATCTGCTTCAGGTGCTCAGGCTCTTTTGAATTTGGGGACCGCGTCTCAAGGCGATCATCAGCAGCGGCTGCTTCCCTATCGTAATCCTTATCGCGGTCAATATTATCGACAAGAGGATGATGTTACTTCGCAAATGCTCAATCTTGGTGCTTCTGTGACCTCAGGATCTCAGCACAATCCTGTGGTTGGGATGTTTGGGGAGATGGTTTTTTCCGGAGTGTTCGGAAGTTCGAGGAATTCTTATCAGACGTTGCGAAATAATGGCTCTAGATTGAGTAGGCAGGAGCTGGAGACTGATAAGTTTTTGAATAGAATTTCAAATTTTCTGGTCTGTTGCGTTTTTGTATGTCTTATTGTATTCTAA 705 0.4553 MAFQQCFPGDMKTIPTSVSEAENSNGCFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSDDYLGVDEHPQCPVCKDNISHTTMIPLYGRGGQAPSSEKSSCFNDGFVPPRPSASGAQALLNLGTASQGDHQQRLLPYRNPYRGQYYRQEDDVTSQMLNLGASVTSGSQHNPVVGMFGEMVFSGVFGSSRNSYQTLRNNGSRLSRQELETDKFLNRISNFLVCCVFVCLIVF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08178 234 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 7 131 - -
Vivi1g08178 234 SMART ring_2 30 77 IPR001841 -
Vivi1g08178 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 91 IPR013083 -
Vivi1g08178 234 ProSiteProfiles Zinc finger RING-type profile. 30 78 IPR001841 -
Vivi1g08178 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 231 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi1g08178 234 Pfam Zinc finger, C3HC4 type (RING finger) 30 77 IPR018957 GO:0046872
Vivi1g08178 234 SUPERFAMILY RING/U-box 26 90 - -
Vivi1g08178 234 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08178 Vivi-Chr1 232621925 232624380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08178 10 220 C3H Transcription Factor Family AT4G27470 39.269 4.52e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08178 K10666 - gmx:100807061 274.633