LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g08170	ATGGTTGGACACAAAAACTCTCATAGATTTCATCATATTCTTCTTCTTCTCTCATCAACTTTCTTCCTTCTCTTCACCTCAACCTCCTCCATAGATTTCATCTTCAACTCTTTCAATTCCTCAACCATCTCCCTCTTCGGAAACTCCACAATCGATTCTCATATCCTAACTCTCACACACCACCAAACCTTCTCCATAGGTCGTGCTCTTTACCCTCACAAAATCCCAACAAAAAACTCCTCATCTTCTTCTTCTCATGTCTACTCTTTCTCCACCTCCTTCATCTTCTCCATGGCACCTTTCAAAGACACACTTCCAGGCCATGGTTTAGTCTTCATCTTCACACCTCTCAAAGGCATACAAGGAACAAGCTCAGCTCAACATCTTGGTCTTTTCAACCTCACCAACAACGGAGATTCGAATAACCATGTTTTCGGTGTTGAGTTTGATGTTTTCATGAACCAGGAGTTTGAAGACATCAATGATAACCATGTCGGAATTGATGTAAATTCTCTTACATCTGTTGTTTCTCATGATGCTGGGTTTTGGATTGATGATGCAAAAAGTGGAAAAGATCAGATTTTTAAGAAACTGGTGTTGAATAATGGTGAGAATTATCAGGTTTGGATTGATTATGGAGATTCTTTGATGAATGTTTCGATGGCGAAATCGGGTATGAAGAAACCTGTTAAGCCTTTGTTGAATGTTTCTGTTAATTTGTCTGATGTTTTTGAAGATGAGATGTTTGTTGGATTTACTAGCTCAACTGGGCAATTAGTACAAAGTCATAAAATCTTGGCTTGGAGTTTTAGCAATACTAATTTTTCATTTAGTGATGAGATTATTACTATTGGTTTACCGTCTTTTGTTCTTCCGAAAGATTCGATTTTTGAGTCGAAACGGTTTGTTGCAGGGTTTAGTGTAGGAGTTTTGTTCATTGTTTGTGTTTTGGTTATGTTGGTGATGTTTTTGGTTCAGGTGAAGAGAAAGAGAGAGAAAAGGAGAAGTGAAATGGAGGATTGGGAGATGGAGTATTGGCCGCATAGAATGTCGTATGAAGAAGTTAAACGCTCGACGAAAGGTTTCTCGGAGGAGAATGTGATTGGTGTTGGTGGAAATGGGAAGGTCTATAAGGGTGTTTTAAGAGGAGGAGTCGTGATTGCGGTGAAGAATATTTCTCATGAGAATAATGGTGTGAGAGAGTTTCTTGCAGAAGTTTCGACTCTTGGAAGGTTGAAGCAAAGGAATTTAGTAGGGTTGAGAGGTTGGTGCAAGAAAAATGCTGGAAATTTCATGTTGGTTTATGACTATATGGAGAATGGAAGTTTAGACAAAAGAGTGTTTTGTGATTATGATAATGAGAGAAAGATGTTAAATTTTGAAGATAGAATAAGGATTCTTAAAGATGTTGCTTATGCTGTTTTGTATTTGCATGAAGGATGGGAAGTGAAAGTGGTGCATAGGGATATCAAGGCTAGTAATGTTTTACTTGATAAAGATATGAATGGAAAGTTAGGTGATTTTGGTTTAGCTAGGCTGCAAAACCATGGACAAGTAGCTAGAACGACGAAGTTGGTTGGAACGGTCGGTTACATGGCTCCTGAAGTGATCAAAACGGGCCGAGCTTCAACTCATACCGATGTTTACATGTTCGGTATCTTGATTTTGGAGGTCATGTGTGGGAGGAGACCGTTGGAAGACGGTAAACCGGGTTTGGTTGAGTTTGTTTGGAAACTTTTGGAGCAAGGGGAGCTTGTGTGTGCACTTGATGAGAGGGTGAGGGCTAAGGGGGAGTTTAGTTTGCAGGAATTGGAGAGAGTGTTGCATTTGGGTTTGTTGTGTGCTTATCCGGAGCCTAAGTCTAGGCCAAGTATGAGACAAGTGGTGAATGTTTTGGAAGGGAGGAATGAGGGAGGTGAAGAGTCGGAGAATATGGATAGTTGTTTGTTGCAACAGTTGAAGTCAAGGGATATTTTGTCTGAGTATTCTTTGTATTTTGGTTATGCAGCACACCCAACTTTTCATGATGTTCCTCAAATTTCCTCAACATCTGTTACTTGGTCTGGACCTTTAGTTGAAGGTAGGTGA	2088	0.3989	MVGHKNSHRFHHILLLLSSTFFLLFTSTSSIDFIFNSFNSSTISLFGNSTIDSHILTLTHHQTFSIGRALYPHKIPTKNSSSSSSHVYSFSTSFIFSMAPFKDTLPGHGLVFIFTPLKGIQGTSSAQHLGLFNLTNNGDSNNHVFGVEFDVFMNQEFEDINDNHVGIDVNSLTSVVSHDAGFWIDDAKSGKDQIFKKLVLNNGENYQVWIDYGDSLMNVSMAKSGMKKPVKPLLNVSVNLSDVFEDEMFVGFTSSTGQLVQSHKILAWSFSNTNFSFSDEIITIGLPSFVLPKDSIFESKRFVAGFSVGVLFIVCVLVMLVMFLVQVKRKREKRRSEMEDWEMEYWPHRMSYEEVKRSTKGFSEENVIGVGGNGKVYKGVLRGGVVIAVKNISHENNGVREFLAEVSTLGRLKQRNLVGLRGWCKKNAGNFMLVYDYMENGSLDKRVFCDYDNERKMLNFEDRIRILKDVAYAVLYLHEGWEVKVVHRDIKASNVLLDKDMNGKLGDFGLARLQNHGQVARTTKLVGTVGYMAPEVIKTGRASTHTDVYMFGILILEVMCGRRPLEDGKPGLVEFVWKLLEQGELVCALDERVRAKGEFSLQELERVLHLGLLCAYPEPKSRPSMRQVVNVLEGRNEGGEESENMDSCLLQQLKSRDILSEYSLYFGYAAHPTFHDVPQISSTSVTWSGPLVEGR	695

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g08170	695	SUPERFAMILY	Concanavalin A-like lectins/glucanases	30	282	IPR013320	-
	Vivi1g08170	695	SMART	serkin_6	362	632	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g08170	695	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	485	497	IPR008271	GO:0004672\|GO:0006468
	Vivi1g08170	695	SUPERFAMILY	Protein kinase-like (PK-like)	336	633	IPR011009	-
	Vivi1g08170	695	Gene3D	Phosphorylase Kinase; domain 1	322	437	-	-
	Vivi1g08170	695	FunFam	Putative L-type lectin-domain containing receptor kinase VII.2	324	437	-	-
	Vivi1g08170	695	PANTHER	-	42	636	-	-
	Vivi1g08170	695	FunFam	L-type lectin-domain containing receptor kinase S.4	438	645	-	-
	Vivi1g08170	695	ProSitePatterns	Protein kinases ATP-binding region signature.	368	390	IPR017441	GO:0005524
	Vivi1g08170	695	FunFam	L-type lectin-domain containing receptor kinase S.4	29	278	-	-
	Vivi1g08170	695	Pfam	Legume lectin domain	31	275	IPR001220	GO:0030246
	Vivi1g08170	695	CDD	lectin_legume_LecRK_Arcelin_ConA	31	273	IPR001220	GO:0030246
	Vivi1g08170	695	Gene3D	Transferase(Phosphotransferase) domain 1	438	655	-	-
	Vivi1g08170	695	CDD	STKc_IRAK	368	634	-	-
	Vivi1g08170	695	Gene3D	-	28	283	-	-
	Vivi1g08170	695	Coils	Coil	324	344	-	-
	Vivi1g08170	695	Pfam	Protein kinase domain	363	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g08170	695	ProSiteProfiles	Protein kinase domain profile.	362	645	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g08170	Vivi-Chr1	232168921	232171410	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g08170	29	583	Receptor kinase-like Gene Family	AT4G04960	64.539	0.0	697

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vivi1g08170		Pkinase	3e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g08170	-		-	gmx:100804391	999.193