Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08163 ATGGAGGAAAATACTAGTTCGTGGTTACAACGGGCGAAGTATTCTCATACGGTGTGTCATCGATTGGATACGTCGAGGATGAAACCGACTCCGTTCAACGATCAACTAGAACAGGAACAAAATTCGAGGTTTTCTTCGTATGTTAAGCGGAATCTTTTAACCAACAAGCAGAGATCTTTGTCGCCGTTGCCGAAGAATTTTATTTCCGATGTGTTTAGAGAAGCCAAACATGAGCAGAAGAGGTTCTCGACGCCGGGTCCGAGGAGGGACAAGAGGATTATGGGAAAGGTGTCGTTGAGCCAGGAATTACCCAGGGTGTCGAGTTCGAAATCGCCTTTTTCGAGTCCGAACAAGCAAAAGATGCCAAAGGGGCTTACGAAGGATTCTTCGTGGGCTAAGCTTTTTGAAAGCGGCGGCGGTGGAAAGGTTACTGCTTTGGAAACGGCGGAGGAATGGACTATTGACATGTCGAAGCTGTTTCTTGGACATAAGTTCGCTCATGGCGCTCATAGTAGGCTTTATCATGGTGTATATAAAGAGGAGATTGTAGCTGTTAAAATGATTAGGGTACCTGATGATGACGATAACGGAGAATTGGCTTCTCGATTAGAGGATCAGTTTGTTAGAGAAGTCACTCTCTTATCTCGCCTTCATCATCGAAATGTCATAAAGGTGATTACGATAACACATCTTCTCTTTTGCATGTTGATCTTCTCTGATTACGATAACATATCTTCTCTTTTACAGTTCATAGCTGCGAGCAGCAATCCCCCGGTTTATTGTATTATCACAGACTATATATCCGAAGGCTCGTTGAGGGCTTATTTGCATAAGCTGGAGCGCAAAACTATTTCTCACGAAAAGTTAATCACTTTCGCTCTGGATATCGCTCGTGGGATGCAATATATACACTCTCAAGGTGTCATTCATAGGGATCTTAAACCAGAGAACATCCTTATTGGTGAAGACTCTCGTCTTATACTTGCTGATTTCGGCATTGCCTGTGAAGAGGCCGTATGCGACCTATTGGCTGATGATCCTGGAACATATCGTTGGATGGCACCTGAAATGATCAAACGAAAATCCTACGGGAGAAAGGTTGATGTGTATAGTTTTGGGCTTATCTTATGGGAATTGTTGACCGGAACAATTCCGTACGAGGATATGAATCCAATCCAGGCTGCTTTTGCTGTTGTGAATAAGAAATTAAGGCCGATTATTCCTCCAAGCTGCCCACCTGCAATGCGAGCATTAATCGAGCAATGCTGGTCGCTGCAACCCGACAAGAGGCCTGATTTCTGGCAGATTGTCAAGGTATTAGAGCAATTTCAATCATCTCTCGCACGTGACGGAACCCTGACGCTGGTGCAGAGTCCTCGTTGCCAAGATCAAAAGAAAGGGCTTCGCCATTTGATGCAAAAGCTTGGTCCGGTTAATCAAAATAGCTACAGCGGCCCTAAGCCTAAGCCGAAATTCACATGA 1482 0.446 MEENTSSWLQRAKYSHTVCHRLDTSRMKPTPFNDQLEQEQNSRFSSYVKRNLLTNKQRSLSPLPKNFISDVFREAKHEQKRFSTPGPRRDKRIMGKVSLSQELPRVSSSKSPFSSPNKQKMPKGLTKDSSWAKLFESGGGGKVTALETAEEWTIDMSKLFLGHKFAHGAHSRLYHGVYKEEIVAVKMIRVPDDDDNGELASRLEDQFVREVTLLSRLHHRNVIKVITITHLLFCMLIFSDYDNISSLLQFIAASSNPPVYCIITDYISEGSLRAYLHKLERKTISHEKLITFALDIARGMQYIHSQGVIHRDLKPENILIGEDSRLILADFGIACEEAVCDLLADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWELLTGTIPYEDMNPIQAAFAVVNKKLRPIIPPSCPPAMRALIEQCWSLQPDKRPDFWQIVKVLEQFQSSLARDGTLTLVQSPRCQDQKKGLRHLMQKLGPVNQNSYSGPKPKPKFT 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08163 493 SMART serkin_6 159 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08163 493 Gene3D Phosphorylase Kinase; domain 1 147 241 - -
Vivi1g08163 493 FunFam serine/threonine-protein kinase HT1 269 462 - -
Vivi1g08163 493 SUPERFAMILY Protein kinase-like (PK-like) 146 440 IPR011009 -
Vivi1g08163 493 Pfam Protein kinase domain 167 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08163 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Vivi1g08163 493 Gene3D Transferase(Phosphotransferase) domain 1 268 480 - -
Vivi1g08163 493 MobiDBLite consensus disorder prediction 78 126 - -
Vivi1g08163 493 MobiDBLite consensus disorder prediction 78 96 - -
Vivi1g08163 493 ProSiteProfiles Protein kinase domain profile. 159 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08163 493 PRINTS Tyrosine kinase catalytic domain signature 411 433 IPR001245 GO:0004672|GO:0006468
Vivi1g08163 493 PRINTS Tyrosine kinase catalytic domain signature 367 389 IPR001245 GO:0004672|GO:0006468
Vivi1g08163 493 PRINTS Tyrosine kinase catalytic domain signature 264 277 IPR001245 GO:0004672|GO:0006468
Vivi1g08163 493 PRINTS Tyrosine kinase catalytic domain signature 302 320 IPR001245 GO:0004672|GO:0006468
Vivi1g08163 493 PRINTS Tyrosine kinase catalytic domain signature 348 358 IPR001245 GO:0004672|GO:0006468
Vivi1g08163 493 MobiDBLite consensus disorder prediction 101 124 - -
Vivi1g08163 493 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 108 447 - -
Vivi1g08163 493 CDD STKc_MAP3K-like 166 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08163 Vivi-Chr1 231751251 231753940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08163 1 493 MAP Kinase Kinase Kinase AT5G58950 50.543 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi1g08163 Pkinase 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08163 - - vvo:131644953 994.956