Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08161 ATGGAGAAAAACCCTAGTTCATCAAGAATTGACAGAAAATTCATTGAGAGAAAAAGAAGAAAAGAAATGAAAACTCTTTGCCACAAACTCACTTCAACTCTTCCTCATCAAACCTCTAAGGAGGCTATTTCGATGCCGGATCGGGTAGAGGAAGCAACAAATTACATAAAAAAGTTACAGATAAATTTGGAGAAAATGAAGGAAAAGAAGAAGTTTCTACTAGAAACTCAAAGGCAAAAGAAGTTGATGTTAAAATCTCCAAAAATTGAGATCCAACAAATAGGTTTAACATTAGAGGTTTTTCTAATAACTGGATTGAATTCTCAGTTTATGTTCAATGAAACCATTAGAATTCTGAATGAAGAAGGAGTTGATATTGTTAATGCTAGCTATAAAGTCAATGAAGATTCAGTTTTCCATTCAATACATTGTCAGGTACAAGAATTTGGCAATGAAAGTGCAAGAATATCTGAGAGATTGAACAAGTTTATGCATGATTATTAG 504 0.3234 MEKNPSSSRIDRKFIERKRRKEMKTLCHKLTSTLPHQTSKEAISMPDRVEEATNYIKKLQINLEKMKEKKKFLLETQRQKKLMLKSPKIEIQQIGLTLEVFLITGLNSQFMFNETIRILNEEGVDIVNASYKVNEDSVFHSIHCQVQEFGNESARISERLNKFMHDY 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08161 167 Gene3D - 1 89 IPR036638 GO:0046983
Vivi1g08161 167 Pfam Helix-loop-helix DNA-binding domain 12 60 IPR011598 GO:0046983
Vivi1g08161 167 Coils Coil 49 76 - -
Vivi1g08161 167 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 163 - -
Vivi1g08161 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 79 IPR036638 GO:0046983
Vivi1g08161 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08161 Vivi-Chr1 231658024 231658784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08161 7 164 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 43.503 1.93e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g08161 HLH 7.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08161 - - gmx:100784418 213.772