Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08160 ATGGTAGGCGTAGCATTCGATGTCGGAGCCGTTCCTTTCAACCCCGACGGATGGGGCCCAATGGACTCCTCCACCACCGCCGCCAACAACAACAACAACCACCTCCCTCTCAACGTCCCCTTCGCCCCTTTCTCCCGCTCCGACAAACTCGGCCGAATCGCCGATTGGACCCGCAACTTCAACAACCAGACCCGATCCAAAAACCCTGCCGATTCCGCCTTCGATTTCACCCTCGACGATTCCTTCCCAGGCAACACCGACGACGACGCCACATTCCGCTTAGTCGATGGAAAACCTCCACCCCGTCCCAAATTCGGCCCGAAATGGCGATACCAGCAGCAACGACAACTTCCTCAGCGTCGCGATGAGGAAGTCGAAGCGAAGAAACGTGAGGCGGAGAAGGAGAGAGCTCGTCGCGATCGGCTTTACCATCAGAATCGGTCGAACCCTAATAATCCTCGACGGGAAGCTGCTGTTTGTAAATCGTCAGTTGATATTCAGCCGGAGTGGAATATGCATGAACAGCTCCCGTTTTCGACTTTCACTAAGCTGTCCTACAATGTTCCTGAGCCTGAGGATCTTCTCCTATGTGGTGCTCTTGAGAATTATGATCGTACATTCGATAGAATTAACCCGAAGAATGAGCGTCGGCTCGAGAGGTTTAAGAATCGGAACTTCTTCAAGGTTACAACCACTGATGACCCTGTTATTAGGAGGCTTGCGAATGAGGATAAAGCGACGGTTTTTGCAACTGATACTATTCTATCAACTCTCATGTGTGCTCCTAGGTCTGTTTATTCCTGGGATATTGTTGTTCAGCGTGTTGGGAATAAGTTGTTTTTTGATAAACGTGATGGGTCGCAGTTGGATTTGCTTTCGGTTCATGAGACCTCACAGGAGCCTTTGCCTGAAGCTAAGGATGATATTAACTCTGCTCATTCTTTGAGTGTTGAAGCTGCTTATATCAATCAGAATTTCTCTCAGCAGGTGTTGATTAGGGATGGGAACAAGGTTACTTTTGATGAGCCTAACCCTTTTGCTAATGAGGGTGAAGAGGTTGCTTCGGTTGCTTATAGGTATAGGAGGTGGAAGCTTGATAATGATATGTATCTTGTTGCTAGGTGTGAGGTGCATAGTGTTGTTGAATTGAATAAGCAAAGGTCGTTCCTTACTGTGAATGCTTTGAATGAGTTTGATCCGAAGTATTCTGGTGTTGATTGGAGGCAGAAGTTGGAGACTCAAAGAGGTGCTGTTTTGGCTACTGAGCTCAAGAACAATGCTAACAAGTTGGCTAAGTGGACTGCACAAGCTCTTTTGGGTAGTGCTGATATGATGAAGTTGGGTTATGTGTCTCGGATTCATCCCCGTGACCATTTTAATCATGTTATCTTGGGTGTGGTTGGATATAAACCCAAGGACTTTGCGGCACAAATTAATTTGAATGCCAACAACATGTGGGGTATTGTGAAGTCTATTGTGGACATGTGTATGAAGATGAATGAGGGGAAATATGTTATTGTGAAGGATCCATCTAAGCCTCAGATTAGGATTTATGAGGTCCCGGCTGATGCATTTGAGAATGACTATGTGGAGGAGCCTCTTCCGGAAGATGAACAAGTTCAGCCTACGGCAGAGGGTGCTGATGGTGGAGAGGAAGCTGCTGCTACTGCTATAAATGACGTGGAAGATAAGCCAATTGATGCTCAAGCTTAA 1713 0.4699 MVGVAFDVGAVPFNPDGWGPMDSSTTAANNNNNHLPLNVPFAPFSRSDKLGRIADWTRNFNNQTRSKNPADSAFDFTLDDSFPGNTDDDATFRLVDGKPPPRPKFGPKWRYQQQRQLPQRRDEEVEAKKREAEKERARRDRLYHQNRSNPNNPRREAAVCKSSVDIQPEWNMHEQLPFSTFTKLSYNVPEPEDLLLCGALENYDRTFDRINPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAHSLSVEAAYINQNFSQQVLIRDGNKVTFDEPNPFANEGEEVASVAYRYRRWKLDNDMYLVARCEVHSVVELNKQRSFLTVNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLGSADMMKLGYVSRIHPRDHFNHVILGVVGYKPKDFAAQINLNANNMWGIVKSIVDMCMKMNEGKYVIVKDPSKPQIRIYEVPADAFENDYVEEPLPEDEQVQPTAEGADGGEEAAATAINDVEDKPIDAQA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08160 570 PIRSF Transl_init_eIF3d 1 549 IPR007783 GO:0003743|GO:0005737|GO:0005852
Vivi1g08160 570 MobiDBLite consensus disorder prediction 115 145 - -
Vivi1g08160 570 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 4 543 IPR007783 GO:0003743|GO:0005737|GO:0005852
Vivi1g08160 570 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 8 519 IPR007783 GO:0003743|GO:0005737|GO:0005852
Vivi1g08160 570 MobiDBLite consensus disorder prediction 533 570 - -
Vivi1g08160 570 Coils Coil 120 145 - -
Vivi1g08160 570 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 4 531 IPR007783 GO:0003743|GO:0005737|GO:0005852
Vivi1g08160 570 MobiDBLite consensus disorder prediction 87 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08160 Vivi-Chr1 231611959 231616475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08160 1 570 Eukaryotic Initiation Factors Gene Family AT4G20980 75.671 0.0 908