Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi1g08156 | ATGAAGTTCAATGTTGCGAATCCCACCACTGGATGCCAGAAGAAGCTGGAAATCGACGATGACATGAAGCTTCGTGCTTTTTGGGACAAGAGGATCTCTCAGGAGGTTAATGGCGATGCTTTGGGAGAGGAATTCAAAGGCTATGTTTTCAAAATTACTGGAGGGTGTGACAAACAAGGTTTTCCAATGAAGCAAGGAGTGTTAACTCCCGGTCGTGTTCGCCTCTTGCTTCACCGAGGAACTCCTTGTTTCCGAGGACACGGAAGGCGTACTGGAGAGCGAAGGAGGAAGTCTGTCCGTGGGTGCATTGTCAGTCCAGATCTATCTGTTCTGAACTTGGTGATTGTGAAGAAGGGGGAGAATGATTTGCCTGGCTTGACAGATATTGAAAAGCCAAGAATGAGGGGTCCCAAGAGAGCTTCCAAGATCCGTAAGCTCTTCAATTTGTCCAAGGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGTACTTTCACAACCAAAGCTGGGAAAAAGCAGAGCAAAGCACCAAAGATTCAGCGCCTGGTCACTCCCTTGACACTTCAAAGGAAGAGGGCTAGAATTGCTGATAAGAAGAAAAGGATTGCTAAAGCAAAATCTGAGGCTGCAGATTACCAAAAGCTTCTTGCCTCGAGATTGAAGGAGCAGAGGGACCACCGTAGTGAGAGTTTGGCTAAGAAGAGATCAAGGCTCTCTACCGCCAAGCCCGTTGCAGCATAG | 744 | 0.4758 | MKFNVANPTTGCQKKLEIDDDMKLRAFWDKRISQEVNGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKQSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAADYQKLLASRLKEQRDHRSESLAKKRSRLSTAKPVAA | 247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi1g08156 | 247 | Coils | Coil | 189 | 216 | - | - | |
| Vivi1g08156 | 247 | SMART | Ribosomal_S6e_2 | 1 | 128 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Vivi1g08156 | 247 | MobiDBLite | consensus disorder prediction | 219 | 237 | - | - | |
| Vivi1g08156 | 247 | Pfam | Ribosomal protein S6e | 1 | 128 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Vivi1g08156 | 247 | Gene3D | - | 133 | 234 | - | - | |
| Vivi1g08156 | 247 | PANTHER | 40S RIBOSOMAL PROTEIN S6 | 1 | 239 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Vivi1g08156 | 247 | MobiDBLite | consensus disorder prediction | 219 | 247 | - | - | |
| Vivi1g08156 | 247 | PIRSF | RPS6e | 1 | 247 | IPR014401 | GO:0003735|GO:0005840|GO:0006412 | |
| Vivi1g08156 | 247 | ProSitePatterns | Ribosomal protein S6e signature. | 52 | 63 | IPR018282 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi1g08156 | Vivi-Chr1 | 231231813 | 231234321 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi1g08156 | 1 | 247 | Cytoplasmic Ribosomal Protein Gene Family | AT5G10360 | 74.297 | 2.01e-122 | 344 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi1g08156 | K02991 | - | gmx:100804076 | 429.869 |