Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08145 ATGGAGACATGCACAAAAGACCCTGTTAATTCCGAAGAAGATGCTTCTAATGATGATAATCCCGTTTCTGTTATTATTTCCAACCCAAAAGTTCTCGATTGCTACAACTGTTTGCAACCCTTAACTATTCCAGTTTTTCAGTGTGATAATGGTCATACTGTTTGCTCTACCTGTTGTCCTCAACTTAGGAACAAGTGTATCAAGTGTTCATTACGCATTAGCTCAAAACGTTGTAAAGCCATAGAGAATATTCTGCAATCTATGGAATTGTCAAGTCCAACTGAAGAACATGTTTATCGGGAAACAATAAGTTATTGTGGAAAGAGAAAGCATGAAGAAGAATGCACCTATGCACCATGTTACTGTCCCCTTTCAGGTTGCAACTTTGTTGCTTCAACATATTTTTTGTCCGACTATTTCCGCCGTAAACATGGGGATTCTTTGATCAAATTTTCTTATGGTCACTTCTTCATTGTCTCCTTGAAGTCCAATGATGAAACCACTATTCTTCATGAAGAATATTCTGGCAAATTGTTTATTCTCAATAATAGTACTACCCTTTTGGGAAATTCAGTCAGTATTAGCTGCATTGGTCCTAAGTCTTTTGAGGTTGAATATGTTTACGATATATTGGCTAGGTTCAAAAACTGCAGTCTAAAATTGCATTCTTTGTTGAAGAACGTCCAGAGTGTTACTCTAGCAAGTCAATCATCAGATTTCCTTGTGATTCCATCTTGTTATTTTGGTTCTTCTAAATTTGTCAAGCTAGAAATTTGCATAACCCCCAAGATAAAAATCTTTGTATTTGATCATACTCGAAAGAGGATATCCCTGAAGGTGGAGAGTTCAGACACCATAGCCAATGTGAAGGAGGAGATTTTTGATAAGAATGGGATCCCAGTCTACAACCAACGCCTAATCTTTTACGGTAAACAAGTAGATGACCTCCGCACCATTGCGGATTACAAAATCCATGATTATTCAACCCTCAACCTCGTCTTCCGCCTTGGTGGTCCACCATTATCATGA 1029 0.379 METCTKDPVNSEEDASNDDNPVSVIISNPKVLDCYNCLQPLTIPVFQCDNGHTVCSTCCPQLRNKCIKCSLRISSKRCKAIENILQSMELSSPTEEHVYRETISYCGKRKHEEECTYAPCYCPLSGCNFVASTYFLSDYFRRKHGDSLIKFSYGHFFIVSLKSNDETTILHEEYSGKLFILNNSTTLLGNSVSISCIGPKSFEVEYVYDILARFKNCSLKLHSLLKNVQSVTLASQSSDFLVIPSCYFGSSKFVKLEICITPKIKIFVFDHTRKRISLKVESSDTIANVKEEIFDKNGIPVYNQRLIFYGKQVDDLRTIADYKIHDYSTLNLVFRLGGPPLS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08145 342 ProSitePatterns Ubiquitin domain signature. 290 315 IPR019954 -
Vivi1g08145 342 Pfam Ubiquitin family 272 336 IPR000626 GO:0005515
Vivi1g08145 342 CDD RING-HC_SIAHs 32 70 - -
Vivi1g08145 342 SUPERFAMILY Ubiquitin-like 239 340 IPR029071 -
Vivi1g08145 342 ProSiteProfiles Ubiquitin domain profile. 264 339 IPR000626 GO:0005515
Vivi1g08145 342 Gene3D - 260 341 - -
Vivi1g08145 342 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g08145 342 SMART ubq_7 264 335 IPR000626 GO:0005515
Vivi1g08145 342 PRINTS Ubiquitin signature 274 294 IPR019956 -
Vivi1g08145 342 PRINTS Ubiquitin signature 316 337 IPR019956 -
Vivi1g08145 342 PRINTS Ubiquitin signature 295 315 IPR019956 -
Vivi1g08145 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 6 261 IPR044286 -
Vivi1g08145 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 138 IPR013083 -
Vivi1g08145 342 SUPERFAMILY TRAF domain-like 101 260 - -
Vivi1g08145 342 ProSiteProfiles Zinc finger SIAH-type profile. 87 145 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08145 Vivi-Chr1 230492743 230495604 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08145 264 338 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 61.333 1.78e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08145 K04506 - mtr:11432566 389.808