Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08144 ATGGAGCAGGGTGGGAGTTGTGGCGGTCGCGGTGGTGGAGATGGACGAAGAGGTGAGATGAATAAGCAAGTTCCTAATCATCCTCAGGCTCAGAAGTGTCCTCGGTGTGACTCGTTCAACACCAAGTTCTGCTATTACAACAACTATAGCCTCTCTCAGCCCCGTTTCTTCTGCAAAACATGCAGAAGATACTGGACTCAGGGAGGGACATTGAGAAATGTTCCTGTTGGTGGCGGTTGTCGTAAGGGAAAGAGACCTAAAAACTCAGCCACAGCCTCTTCAAGTAATTCCATTGGGAATTCTTCTCTAGCTTATGCTCATGCTCAAGCTCATGCTCAGTCAGCGCTGCAACAGTCGACTGATCAGTCGACTATTGCTGCGCTGGCTAGAGATCCTTCAGTTTTAGCTTCTCTTTCCTCCACTGTTCCTTATTATCAAGGTGGTGTTGGTTATATGTCATCTTTTGCAGCGTTTAATCCAGCTCTGAATCCAAATCTATCAACACACAATTATAATCCGTCTCTCGGCGGAGTTGGTGTTGGTGTTGGTTCTTCTTCAAATTTGGGTCTTTTACAAGGCTTTAATGCTGCTGCTGCTCTTGGAAATTCATCACAGGGACAAAACCGTCCATCTCAGTTTTTTCAAATGGGTGGTAATTGTGGACCAATGTTTACTTCAGAACAACAAGGTCTGAGTTTGCTTCCACCATCTCTTTCCGGTTCGGGTTCCGCCGCTGATAATTGGCCTCAAAACTACATCAACAATACAAACAACACTAGAATCCCCGAGCAATCTCTGTGGAGTACTGTCAGCACCACTTCAATTTCCGGAGTTAGTTCTGATAGGAATGGTGGCAGTGGCACCCTTGGTGGTATTGGTATCGGTATCGGCAGCAGTAGCGGCGGAGACGGCGTTTCTGCTCCTCTGGGCCCAAATCAGTGGCCTGATCTTTCCGGATTCAACCCTCAGTGA 972 0.4733 MEQGGSCGGRGGGDGRRGEMNKQVPNHPQAQKCPRCDSFNTKFCYYNNYSLSQPRFFCKTCRRYWTQGGTLRNVPVGGGCRKGKRPKNSATASSSNSIGNSSLAYAHAQAHAQSALQQSTDQSTIAALARDPSVLASLSSTVPYYQGGVGYMSSFAAFNPALNPNLSTHNYNPSLGGVGVGVGSSSNLGLLQGFNAAAALGNSSQGQNRPSQFFQMGGNCGPMFTSEQQGLSLLPPSLSGSGSAADNWPQNYINNTNNTRIPEQSLWSTVSTTSISGVSSDRNGGSGTLGGIGIGIGSSSGGDGVSAPLGPNQWPDLSGFNPQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08144 323 MobiDBLite consensus disorder prediction 1 31 - -
Vivi1g08144 323 MobiDBLite consensus disorder prediction 275 323 - -
Vivi1g08144 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 201 IPR045174 GO:0003700|GO:0006355
Vivi1g08144 323 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Vivi1g08144 323 Pfam Dof domain, zinc finger 29 85 IPR003851 GO:0003677|GO:0006355
Vivi1g08144 323 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Vivi1g08144 323 MobiDBLite consensus disorder prediction 76 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08144 Vivi-Chr1 230407376 230409377 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08144 14 97 C2C2-Dof Transcription Factor Family AT5G60850 65.476 3.64e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi1g08144 zf-Dof 3.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08144 - - tpra:123905519 310.457