Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08142 ATGTTAGCTAACTGCGAGAAAATGGTTTCCATCCCTCCACCAACTACTAACCAATGGCCACAGAATCAAATAGATGATGCTAAGATAATGGAAAAACAAGGCCAAGAGCTTCTGCAACAGCATCAGCAACAAGCACTCAAGTGTCCTCGTTGTGATTCATCAAACACAAAATTCTGTTACTACAACAACTACAGTCTGTCACAACCTAGACACTTCTGCAAAGCCTGCAAACGGTATTGGACAAGAGGTGGTACTCTTAGGAATGTTCCTGTTGGTGGTGGATACAGAAGAAACAACAAACGTAGTAGTAGTAGTAGTTGTAATGTTTCTACTACTATCATGAAAAGACCAATATCCACCATTGAAACCACTACTACTACTACTGCTGCTAGTTCTAATTCTTCGACTCCGAGTTCGAACTCAAATCATATAAACCCTATGTTTTATGGCTTATCTAGTACTAACAACCCTTGTGATGTGAATCTTCCGTTTTCGAGGTTCAATATAAACTCCAGACTCTCGACAAGTTCAGGTTATGATCTTCAGCCTCAGATGAATTTTATAGGGTTAGGTTTTTCATCTGGGTTTGATAATAATGGTTATACAACAAACTATGATTCAATCTTTAGTTCTTCAGCTTCTGCATCAAGTAATACATCAGTTATGCCTTCTGTATTGAGTTCTACTCTACTGCAACATAAGTTCTTCGACGACGGTTTGAAATATGGTTCAGATGCAGATGCAGGTAGAAATAGTACTTTCCAAGATTTCGAATTCGGCTCAAAAATGCAAAACCGGGTTGATCATATGGGTGGTTTCTATGATCCAGCTTCTTCACTTTACTTGAATGATCAAGGTGTTTGGAATAATCAAGGTGGAAATAATATTGGTTCATCAGTTACTTCTCTGATCTAG 915 0.3836 MLANCEKMVSIPPPTTNQWPQNQIDDAKIMEKQGQELLQQHQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGYRRNNKRSSSSSCNVSTTIMKRPISTIETTTTTTAASSNSSTPSSNSNHINPMFYGLSSTNNPCDVNLPFSRFNINSRLSTSSGYDLQPQMNFIGLGFSSGFDNNGYTTNYDSIFSSSASASSNTSVMPSVLSSTLLQHKFFDDGLKYGSDADAGRNSTFQDFEFGSKMQNRVDHMGGFYDPASSLYLNDQGVWNNQGGNNIGSSVTSLI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08142 304 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Vivi1g08142 304 Pfam Dof domain, zinc finger 44 100 IPR003851 GO:0003677|GO:0006355
Vivi1g08142 304 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Vivi1g08142 304 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 207 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08142 Vivi-Chr1 230242640 230245021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08142 1 304 C2C2-Dof Transcription Factor Family AT1G28310 36.695 2.18e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi1g08142 zf-Dof 3.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g08142 1 230242640 230245021 Vivi1g08142 1 230242640 230245021 ECH
Vivi5g04079 5 137019396 137023194 Vivi1g08142 1 230242640 230245021 PCT