Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08141 ATGGATGAAAGTTGGGGTGAGGGAAAGAGAACCTATGAGTATGAAGTAGAAGAGGAAGAGGATGGGAGTTATGGAGAGGATGGAAAGAAGAAAAGGGTTGTGAATGAACATCATGTTAGGAAAGTTTCAAGAGGTGGTGGATCAGTTACACCTTCTTGTCAAGTTGATAACTGTAATGCTGATCTAAGTGGTGGTAAGCAGTATCATAAGCGCCATAAGGTTTGTGAAAACCATTCTAAGGCTCATTCTGTCCTCATTTCTGAGATGCAACAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGTTATCAGAATTTGATGACTTAAAGAGAAGTTGTAGAAGGCGTTTGGCAGGACACAATGAGAGGCGTCGCAAGAATGCATCGGAATTTAATGGAGAAGGAATTCATTGA 414 0.4106 MDESWGEGKRTYEYEVEEEEDGSYGEDGKKKRVVNEHHVRKVSRGGGSVTPSCQVDNCNADLSGGKQYHKRHKVCENHSKAHSVLISEMQQRFCQQCSRFHELSEFDDLKRSCRRRLAGHNERRRKNASEFNGEGIH 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08141 137 SUPERFAMILY SBT domain 51 130 IPR036893 GO:0003677|GO:0005634
Vivi1g08141 137 Gene3D - 43 114 IPR036893 GO:0003677|GO:0005634
Vivi1g08141 137 MobiDBLite consensus disorder prediction 1 16 - -
Vivi1g08141 137 FunFam Squamosa promoter-binding-like protein 14 44 114 - -
Vivi1g08141 137 Pfam SBP domain 53 126 IPR004333 GO:0003677
Vivi1g08141 137 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 128 IPR044817 GO:0003677
Vivi1g08141 137 ProSiteProfiles Zinc finger SBP-type profile. 50 127 IPR004333 GO:0003677
Vivi1g08141 137 MobiDBLite consensus disorder prediction 1 30 - -
Vivi1g08141 137 PIRSF SBP 2 137 IPR017238 GO:0003677|GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08141 Vivi-Chr1 229874244 229876390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08141 47 130 SBP-box Gene Family AT2G33810 67.816 2.46e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi1g08141 SBP 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08141 - - gmx:100782285 181.8