Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08133 ATGCCAGTTTCAGATTCTCCCCCCGTATCAGATGATCCTTCTCTTCAAGATGATGAAGGCTCCGAGGAAGAAGAAGAGGTTGAAGAAGTAGAAGTAGAAGAGGAAGAAGATGAGGATCAGGAAGAGGAAGAAGAAGAGGAAGAGGTGGAAGAAGTTGAAGTGGAGGTGGAGGAAGAAGTTGAAGAAGAAGAGGAGGAGGAAGAAGTCGAGGAGGAAGAGGTTGAGGAGGAAGAGGAAACAGTAGAAGTGGAAGAGGAGGAGGAGGAGGAGGAAGAAGTTGAAGAAGAAGTTGAAGAGGAAGTTGAGGAGGAGGAGCAGGAGGAAGAAGAAGTTGAGGAGGAGGAGGAAGAAGAAGAAGAAGTGGAAGAGGAAGAGGAAGAGGAGGAAGAACAAGAAAGAGTAGTAGAGGAGAAAAATGAAGGCAAAGAAGAGATTCCAGTTTCTCTGCCCAATGAGAATGAGCTTAGCAAAGAAACTGTAGAGGTGGTGGTGGAGGAAGAGGAAGTGGAAGAGGAGGAAGAGGAGGAAGAGGTAGTGGAAGAGGAGGAAGAGGAAGTGGAAGAGGAGGAGGAAGGGGAGGAGGAAGAAGAAGAAGAAGAAAAAAAAGAAGCAATAGAGATGGAAGATGAGAAAGAACAAGGAACAGTAGTAGAGAAGAAAGATAAAGACAAGCACGGGGTTCTAGAATCTCTTCCTGATGCGGATAAACACAGCAAAGATTCGAGCCAACATATGGAGCTTGATGTGAAAGAGGAGAATTTGCGGCCAGTTTCTTCTGTGCCCGAGAATCCTGAAGTAATACGGTCATCACATGATATGGAACTTGATGTCAAAGAGAAGAATTTGCGGCCAGTTTCTTCTGTGCCCGAGAATCCTGAAGTAATACGGTCATCACATGATGTGGAAGAGAATAATGCCATGTTTTTAGCATCTGTTCCGCCGCATGAGGACTTGACATTAAAGCAAGAAGTTTCTAGTCCTCCAAAACCAAGTGAAAACTTAAATTCTGCTGAAGATGAAAAAAATCAAGACTTAAATGTTGATGTTGAAAATTCTGGATATCTTCAGAAGAAAACCTTTGGAGGAAGCAGTGAACCAGATTGCAATAGCAAAGCTTCTTTATCTGATGTTAAGGATATTGATTCTAGAGCCACCAAGTCATCTAGTAATACGGTAAAAGACGGGGTTACTGGAATCATACCGAGAGATGATTTTGTGGAGGATGCTAATGGTGGTCAGAACTCTAAGGAGAAAATTATGCAGTCAGAGACGGAGTCAAGGGTTGATGCGAAACAAAAGCCATCAAGGGCTAGAAGTCCTTCTCCCAGTGCTCAGATTACAGATGGAAACAAAAGACGTGCAGTTACATGTGCTTTTTTCGCTAAAGGTTGGTGCATCAGAGGCAGTTCTTGTAGCTTTCTTCATATAAAAGATAGCGCGGATAATGAGAAGAGAGAATTGAAATTGGAAAAAGGTGCTAAGGAAAATGTTGACGGGTCAAGAACGAATGAGAAAGAAGCAAGTCCGAGTTGGCATCCATCTCATGAAAAAGAGAAGTTTCCGATGAGGGACAACTTGTTTCCAGAGAATAGATCTGCATTTAATACATCAAACAATTATTTCAGCTCAAATCTTTCCTCGTATTCATCCCGTACAGAGGGAATGGCTGCTATTCGAAACCAACATGGGTACAGAGGTTATACACCAACAAATGATTTTAGTTCGTCTTTAGGTGCAAGTGCTTTGGACTCTCAAAAGCTTTTGAACAGTGAGAAGGAATATCACGCCTATAAGTCCACTTTCTCTTCAGACCGGGAAGATTTGTATCGAGGTGGTTCATCTAAGGTTTCACCACATGCTAATGGATATAAACTAAAAACCCGTTCTTATGATTGGGAACCTTCTGTTCCATTTCGACCATCCTTTTTTATCACTTCAATGAATGTATCATCCCCTGGAGATCTGTATGACCCTCTTCGCGATAGCATTGAGATACCTAATATTGGAGATGGGTCTTTGAAAGCTTCCCTTCTAATTCGAGGGTCATCTATCCAGGCTTCATCACAGTTACGGACATATGATGATTCTGCTGCAGTTGGGAAACACATGTCCGATCTTAATGATGACAAAAGTTCGGTATCTTCCCATAATAAATTTTATGAAAATGAGCCAAACAGAAGTTCTGTTCCTCGTGGAAAAGATTCTCTTGCAACCAAAACAGAAATAACATCAGGAACTTGTGCAAACTACCAAAATGGTAGCATAGATATGGGACAAAATGCCTTTGGTGTTGAAGATAGGATTGAAACAACAAAAAAACGAACAAAACATGATGCTAGGCATCACGGTGATGGATCAGAGCACAAAAATAAAAGAGTAGCAAGGGATGATAAAATTCATGAAATGGAGGTTGACTTTCAGACGGATGGCAGTAATCACAAAGAAACAAAGGCACTGAAAATTTTTCGTGCAGCCCTTGTTGATCTAGTGAAAGAGTTGCTAAAACCATTTTGGCATGAGGGTCGTCTCAGCAAGGAAGCACATATAACAATAGTTAAAAAATCAGTTGACAAGGTTGTTAGCACTTTAGAGCCACACCAAATTCCAACAAATGAAGATTCTGCTAAGCTATATATTTCTTCATGTCGGCCGAAAATTACAAAGTTAGTCCATGGATATGTGAATAAACATGGAAAATCTTGA 2703 0.4129 MPVSDSPPVSDDPSLQDDEGSEEEEEVEEVEVEEEEDEDQEEEEEEEEVEEVEVEVEEEVEEEEEEEEVEEEEVEEEEETVEVEEEEEEEEEVEEEVEEEVEEEEQEEEEVEEEEEEEEEVEEEEEEEEEQERVVEEKNEGKEEIPVSLPNENELSKETVEVVVEEEEVEEEEEEEEVVEEEEEEVEEEEEGEEEEEEEEKKEAIEMEDEKEQGTVVEKKDKDKHGVLESLPDADKHSKDSSQHMELDVKEENLRPVSSVPENPEVIRSSHDMELDVKEKNLRPVSSVPENPEVIRSSHDVEENNAMFLASVPPHEDLTLKQEVSSPPKPSENLNSAEDEKNQDLNVDVENSGYLQKKTFGGSSEPDCNSKASLSDVKDIDSRATKSSSNTVKDGVTGIIPRDDFVEDANGGQNSKEKIMQSETESRVDAKQKPSRARSPSPSAQITDGNKRRAVTCAFFAKGWCIRGSSCSFLHIKDSADNEKRELKLEKGAKENVDGSRTNEKEASPSWHPSHEKEKFPMRDNLFPENRSAFNTSNNYFSSNLSSYSSRTEGMAAIRNQHGYRGYTPTNDFSSSLGASALDSQKLLNSEKEYHAYKSTFSSDREDLYRGGSSKVSPHANGYKLKTRSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIRGSSIQASSQLRTYDDSAAVGKHMSDLNDDKSSVSSHNKFYENEPNRSSVPRGKDSLATKTEITSGTCANYQNGSIDMGQNAFGVEDRIETTKKRTKHDARHHGDGSEHKNKRVARDDKIHEMEVDFQTDGSNHKETKALKIFRAALVDLVKELLKPFWHEGRLSKEAHITIVKKSVDKVVSTLEPHQIPTNEDSAKLYISSCRPKITKLVHGYVNKHGKS 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08133 900 Coils Coil 155 213 - -
Vivi1g08133 900 SMART c3hfinal6 451 477 IPR000571 GO:0046872
Vivi1g08133 900 MobiDBLite consensus disorder prediction 717 736 - -
Vivi1g08133 900 ProSiteProfiles Zinc finger C3H1-type profile. 451 478 IPR000571 GO:0046872
Vivi1g08133 900 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 456 475 IPR000571 GO:0046872
Vivi1g08133 900 MobiDBLite consensus disorder prediction 420 434 - -
Vivi1g08133 900 MobiDBLite consensus disorder prediction 206 255 - -
Vivi1g08133 900 MobiDBLite consensus disorder prediction 161 205 - -
Vivi1g08133 900 MobiDBLite consensus disorder prediction 701 736 - -
Vivi1g08133 900 SUPERFAMILY CCCH zinc finger 451 475 IPR036855 GO:0046872
Vivi1g08133 900 MobiDBLite consensus disorder prediction 701 716 - -
Vivi1g08133 900 MobiDBLite consensus disorder prediction 311 449 - -
Vivi1g08133 900 MobiDBLite consensus disorder prediction 1 294 - -
Vivi1g08133 900 Coils Coil 20 144 - -
Vivi1g08133 900 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 171 554 - -
Vivi1g08133 900 MobiDBLite consensus disorder prediction 267 283 - -
Vivi1g08133 900 MobiDBLite consensus disorder prediction 772 793 - -
Vivi1g08133 900 MobiDBLite consensus disorder prediction 347 371 - -
Vivi1g08133 900 MobiDBLite consensus disorder prediction 490 519 - -
Vivi1g08133 900 MobiDBLite consensus disorder prediction 15 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08133 Vivi-Chr1 228952745 228958100 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g08133 zf-CCCH 4.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08133 - - cam:101503101 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g08133 1 228952745 228958100 Vivi1g08133 1 228952745 228958100 ECH