Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08130 ATGGCTTCTTCATCATCTTCTTCTGCGAACCGTGAAGGACACTACAGAGGTGTTAGAAAGCGACCATGGGGACGCTACGCTGCTGAGATTCGTGATCCCTGGAAGAAGACACGAGTTTGGCTGGGTACATTTGATACTCCTGAAGAAGCTGCACTTGCTTACGACGGCGCCGCTCGTTCTCTCCGTGGAGCTAAAGCTAAAACAAACTTCCCTCCGGCTCCGGTCCCCGGCGGGCTTTCTCTCGACCTCAACGCTCCTTCTACTGGCCTAACCACTTGGCCACCAGTTCCGTCACGGAGCTTGGTTCTCACGGAGTTTCTCCAAACCGGTATTCTCAAGGATTTCAACCCTCCTCAGCCTCCTCCCATCACCGCCGTCAGTGGACAGAGACGCAATGACGCTGCTCTTCCGGTTTCCACCAGAGTTCAGATGGTTGAGAACTCACCAACAGCGGCTTACTTGGGACTTGTCCGACGTGGGATCCCGATTGACCTTAACGAACCTCCACCGTTGTGGCTTTGA 522 0.5441 MASSSSSSANREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPVPGGLSLDLNAPSTGLTTWPPVPSRSLVLTEFLQTGILKDFNPPQPPPITAVSGQRRNDAALPVSTRVQMVENSPTAAYLGLVRRGIPIDLNEPPPLWL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08130 173 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Vivi1g08130 173 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Vivi1g08130 173 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Vivi1g08130 173 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 119 - -
Vivi1g08130 173 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Vivi1g08130 173 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Vivi1g08130 173 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Vivi1g08130 173 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Vivi1g08130 173 FunFam Ethylene-responsive transcription factor 2 14 72 - -
Vivi1g08130 173 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08130 Vivi-Chr1 228852849 228853923 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08130 5 173 AP2-EREBP Transcription Factor Family AT1G28360 48.515 6.78e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g08130 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08130 - - cam:101504196 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g08130 1 228852849 228853923 Vivi1g08130 1 228852849 228853923 ECH