Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08125 ATGGCGCCGAAGGTTAAGAGCGGTGACATTAACGTGAAGAGTAACGGAAACGGTAACGGTAACGGTAACGGTAACTGCAACATTAACGGCGGAGTTGTTAAGGAGCCGCATTTTCGCGGTGTGAGGAAGAGGCCATGGGGAAGGTACGCCGCCGAGATCAGAGATCCGGGAAAGAAGAGCCGTGTCTGGCTCGGCACCTTCGACACGGCGGAGGAAGCGGCGAGAGCCTACGACACCGCCGCACGTGAATTCCGTGGTCCGAAGGCCAAAACAAACTTCCCTTACCATACGGAAGCTCTCAAGATCCATAGCCCTAGCCAAAGCAGCACCGTTGAATCCTCAAGCCGCGACCGTGACCGTGACCGTGACGCTGCTGCAGATTCTTCTTCTCCGCTTGACCTCAATTTGGCTCCTCCGATCAAAGGTCCGGTTCGGTTTCCGTTTCAGCATCGGTTTAGTCTGAATCCGATGCCGACGTTAAACCAGGCGCAGGCGCAGGCGTTTTACTTTGACGCTAATCTACGCGCCGGGAACGGTTACGGATTGGAATACTTTCCCTCCGTGAAGGCGAGTGGAATCCACGTGACGACGACCGGTGCACAGAGTGATTCCGACTCTTCATCGGTGATTGATCTGAACCACCGTGAAGACGGTGTAAAAGTAAAATCCGGAAGAGATTTCGGTTTCGATTTTGATCTTAATTTTCCTCCTCCGGAAGATATGCTATGA 729 0.5336 MAPKVKSGDINVKSNGNGNGNGNGNCNINGGVVKEPHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFPYHTEALKIHSPSQSSTVESSSRDRDRDRDAAADSSSPLDLNLAPPIKGPVRFPFQHRFSLNPMPTLNQAQAQAFYFDANLRAGNGYGLEYFPSVKASGIHVTTTGAQSDSDSSSVIDLNHREDGVKVKSGRDFGFDFDLNFPPPEDML 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08125 242 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Vivi1g08125 242 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 210 - -
Vivi1g08125 242 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Vivi1g08125 242 MobiDBLite consensus disorder prediction 113 127 - -
Vivi1g08125 242 CDD AP2 36 96 IPR001471 GO:0003700|GO:0006355
Vivi1g08125 242 Pfam AP2 domain 36 86 IPR001471 GO:0003700|GO:0006355
Vivi1g08125 242 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Vivi1g08125 242 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vivi1g08125 242 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Vivi1g08125 242 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Vivi1g08125 242 MobiDBLite consensus disorder prediction 98 138 - -
Vivi1g08125 242 MobiDBLite consensus disorder prediction 10 28 - -
Vivi1g08125 242 FunFam Ethylene-responsive transcription factor 2 37 96 - -
Vivi1g08125 242 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08125 Vivi-Chr1 228342620 228343980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08125 1 122 AP2-EREBP Transcription Factor Family AT5G44210 55.906 4.93e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g08125 AP2 1.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08125 K09286 - gmx:100170742 218.394