Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08109 ATGGAGGAAGAAGCAGAGAATAATAATACTCAGAAAGTTGAGGAAGGAGGTGAAAATAGCAATGAGAATTTCAACAATAGTAAAATTATGAGTTCCAGTGAAGGTCAAAGCAAGCCCAAGCGTCAGATGAAAACGCCGTTTCAACTTGAGACGCTGGAGAAAGCTTATGCTTTGGAAACTTACCCGTCGGAGAGTACGAGGTTAGAGCTGTCGGAGAAGTTGGGGCTGTCGGATCGGCAGTTACAGATGTGGTTCTGTCACCGGAGGTTGAAAGACAAGAAGGAGTTACCGACTAAGAAGCCACGGAAGGTGCCACCTTTGCTGGATTCTACTAGTCATGAACTTAACCCCAAGTTGGCTATTGAACCTTTTAATGAATATGGATCCGGGTCGGGTTCTGGGTCTAGTCCGGTGACGCGGCCGGAGTTGCGAAATGTGGTGGTTCGGAGTTACTATGAGTCGCCGCAGAGTATAATGGAGCTTAGAGCTATTGCTTGTGTGGAAGCACAGTTAGGGGAGCCTTTGAGGGAAGATGGACCGATTTTGGGAATCGAGTTTGATCCGTTGCCACCGGATGCATTCGGGGCACCCTTAGCTCTTGCCGAACAGCAGAAGCGGCCTAGTCTTCCCTACGACAGTAAAATATATGAAAGACATGAAGTTAGAACGAATAAGGCAATGCCAAGGACATTCCCTGAATATACATTTGTTCCGAATCAGTCCAGCATTAGGTCCGACACGTTTGAGCAATTGAGTCAACCTCATTTGTATGATGCAATGGAGGGTCCTTCAAGAACTCCTCCTTTTCCGATTGGAAATGAACATCTACCTAGAATTCATGCTACGCAAAGCCATTCTTCCCGTGTTCGTCTTTCGTCTCAACAGGATAAGCAAGTGAATCCCTATACTCCCCCTCCTCCCGTTTTGTCTCAACAGAACAAGCAATTGGTTCCCTTTCCATCTCCTCCTCGTGATAATGATGTTGTCCCCAAAAGGGAACCTCACACAAACATAGCCATTACTGGCATGAACTCCCAATTCACTGATCACCAAATTGTTGGACAAGAAAATCCTTTAGCTTTACCTGGTGTACAAGTTTTCCATAATGATGCGGTATTGCGGGTGGAGAAGAAACGAAAGAGTGATGATGCCAGAGTTGCAAAAGAAGTTGAAGCCTATGAAATGAGGATGAAGAAAGAACTTGAGAAACAAGATATCCTTAGAAAAAAGAATGAAGAACGAATGAGGAAAGAGATGGAAAGACAAGACCGTGAGAGAAAGAAGGAAGAAGAGAGGCTGATGCGTGAGAGACAGCGAGAAGAGGAAAGATCAAAGCGTGAGCAAAAACGGGAGATAGAACGAAGGGAAAAATATTTGATGAAAGAACATTTAAGAGCCGAGAAAAGGAAGCAAAAAGAAGAGATTCGCAGAGAGAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAAAAAGCAAATGCTCGCAGAATAGCCAAAGAATCTATGGAGCTCATTGAGGATGAACAGCTGGAATTGATGGAGTTGGCTGCAGTAAGCAAGGGGCTTACCTCTATTATCCATATTGATCTTGATAGTTTGCAAAACCTTGAATCATTTAGGGATTCCTTGTGTGTTTTCCCGCCCAAAAGTGTAAAGCTAAAAAAACCATTTGCTATCCAGCCCTGGATCAACTCGGAACAAGACGTTGGCAACCTTCTCATGGTTTGGAGATTCTTGATTACCTTTGCTGATGTTCTTGAGTTATGGCCTTTTACTCTTGATGAATTTGTGCAAGCGTTTCATGATTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTATTCTTAAAGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTACAGGATTAGGAGTGAACCAGAATGGAGCTGCTAATCCTGCCGGTGGCCATCCAGAGATTGTGGAAGGAGCATATACATGGGGCTTTGACATACGAAATTGGCAGAAGAACTTAAATCAATTGACATGGCCTGAAATTTTGCGACAGTTAGCGCTATCAGCAGGGTTGGGACCACAGTTGAGGAAAAGAAGTATTACTTGGTCATATGCAAATGATAAAGATGAGGGAAGAAGTGGCGAAGATGTCATTTCAACACTTCGTAATGGTTCAGCAGCTGTAAGTGCAGTGGCAAAAATGCAAGAGAAAGGTCTATTAGCTCCTCGAAGATCGAGACATAGGTTAACTCCAGGAACCGTTAAATTTGCAGCATTTCATGTTCTCTCTCTCGAGGGCAGCAAGGGCTTGAATGTACTAGAGCTTGCAGAAAAGATTCAGAAATCTGGCCTTCGTGACCTGACGACCAGCAAGACACCTGAAGCATCAATTTCGGTTGCTTTGACAAGAGATGGCAAACTTTTCGAAAGGATAGCTCCATCAACATATCGTGTACGAACTGCATTTAGACAAGATCCTGCTGACTCTGAGTCTATTCTTTCGGAAGCAAGAAAGAAAATCCAGATATTTGAAAATGGGTTTCTAGCTGGTGTAGATGCCGAAGATGTTGAAAGAGAAGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGAGGATGATTTGATTAATCCTTCAAGTGGAAACCCAAATTCAGAACAATACGACGATATGTACATTTGCTCAGTAAATGTAAAAGCAAATTTGGGTCATGATGTAGACTTTATTCAAAATGAGCTTGATACCGATCTTCCTTGTTTTCCTGAGAATGGTTCCAAGGATGCAGATTGTTCCAGTTCTGTCACCAGACAACCAGTTGCTTGTGAAAATGTAAATACTGGAAATCTAGATGATAATATTATGGAAATCGATGAAAGCAAGTCTGGAGAATCATGGGTTCAAGGGCTTACCGAAGGAGAATACTCTGATCTCAGCGTAGAGGAGCGTTTAAATGCTCTTGTTGCATTGGTTGGTGTAGCAAATGAAGGAAATTCAATCCGTATTGTTCTTGAGGATCGTTTGGAATCAGCAAATGCTTTGAAAAAGCAAATGTGGGCAGAAGCACAAATAGATAAAGTTCGGCTAAAAGATGATTATATTGGTAAATTAGATTTTCCGTCACTTACTGGAAATAAATTTGAAACACAAGACACATATCCCGCTGTTGAGGGAAACCATAGCCCATTGCTCAACATCAATATTAACAACATTAAGAATGAAGCATTCCCCAGCACTACAGAAAACCAAAAAGGAGCTCCTGCAACGAGCCTACTTATTGAAAAGCCATCAACAGTTCAAGATTTCTGCACAAGCACCGGTCAAGATAACTTTCAGACTCAGGTAGCTGCGCCGTATTCAAAAAGGTCACGGTCACAGTTGAAGTCCTATATTTCCCACATAGCAGAGGAGATGTATGTCTACAGATCTTTACCCCTTGGCCAAGACCGCAGGCGTAATCGATATTGGCAGTTTGTTGCATCTGCTTCTAGTAATGATCCTGGTTCTGGTAGGATCTTTGTTGAACATCTTGACGGAAGTTGGAGGCTTATTGATTCTGAAGAGGCCTTTGATATTCTTTTGACATCACTGGATTCACGCGGGATAAGGGAATCTCATTTGCGCTTAATGTTGCAAAAGATTGAGAAATCCTTTAAAGAAAATGTTCGAAAAACTACACAATATGCAAAAATTGGAAACGTAGAGGAACGTTCTATTATTAAAACTGAAGCTGATGAAACAAATCCAGTGCCTGAGCGCCATTCAGGAGCTGACAGTCCTAGCAGTACCCTTCATGACTTGAACTCTGGTAAATCAGAAACTTCATCATCCTTCAAAATCGAGCTCGGGAAAAATGAGAACGAAAAGAAAGCTTCCTCGAGAAGGTATCAAGATTTTCAAAAGTGGATGTGGAAAGAATGCTATAATTCATCAATTTTATGTGCAATGAAATTTGGGGTAAAAAGATGCAAACCTCAGGTGGTTATTTGTGAAATCTGTCTCAATCCTTATTTTGTTGAAGACCCCCATTGCAATTCCTGCCACCGCACATTTCCGTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGTTGGCAATTTATCCAAAGATATTTGTATTTTGGAACATTCTCTTCCCATGAGGACAAGATTGCTTAAGATCCTACTGTCATATATGGAGGCATCTGTTCTCTCTGAAGCATTTGGAACAATTTGGACAACTGATTTTAGGAAGCATTGGGGTGTGAAGTTGAGTAAATCATCATCCATTGAGGAACTTTTACAGATGTTGACCTTATTTGAAAAAGCACTAAAGCGAGATTTTCTATCACCAAACTTCTCTACAACAGACGAATTGTTGGGATTAAGCAGAATGTCAGAAAGGGCTGCACAGGTGTCTGCTGATCCTGAATCAGTTGCTCTACTTCCATGGGTTCCACAAACTACTGCAGCATTATCTCTCAGGCTATTTGAGTTTGATTCATCCATTAGCTATGTAAAGCTTGAGAGACTTGAGCCTGTTGAGGAGAAAGAAGCAAGAGAATACATTAGGCTTCCAACAAGATATACTCCCTTCAAGCCTAATAGAGAGGTTGAACCAGCAGTTCTTGATCATGATGTATTCACCAAAGTTAAATCTTCTACTAACAAAATTGTACGTAGTGGAAATAAACGTGGACGAGGGGCTAGTGATTATGGGAGGCCGAAAAAGCTGTCTAGAAGAATGTACAATTCCAAACGAGATACTGGCCGTCGAAATGTTAATGTCACCGAGAATCTAAGTCAGAAATTAAGATTGCAGGGACGAGGAACACAAGGACAAGTGGGTGGACGAGGTCGGCGAACGGTCAGGAAACGTAGAGTAGAAAAGAGAGCTGTTGAAGATTTGTTGCTGGGCCATGCAGCAGCTGGTCATAGCTCCAAGAGTGGTAAAGAACCATTTAGAAGCTTTGATGAAGAGTGGGATGTAGAAAAAGCAAGTTCCTTGACTCCTATTCACATCGGGGTTGCTGAAAATAGTATCAGCGTTGAAGAGGTGGAATCTGATGATAATGCTCAAGGAATGGAGTCTTATGATAATGCTCAAGGAATGGAGTCTTATGATAATGCTCAAGGAATGGAGTCTTATGATATTGCTCATGGAATGGAATCTGATGATAATGCTCTAGGAATGGAATCTGATGATAATGCTCAAGCAGTAGAATATGATCATGGAAACTGGGAGATAGGTTATAACGGCATCTCCCCTAACAGATGGAACAGGGATTTGGTTGGAATGAGTGATGAAGATGTCGATGCTTTTGAAGATGACAACGACAACAATAATGGTAATGTGAATGGTTTTGAAGAGAATTTCGAGGAAGATTCCGAGGAAGATGTTATGAGTGAAGGTTCGGATCACACGGCCAATAGAGTAGTGAATGCAGGAGGCTCAGATTTGTCTGTCTCTGAAGATTCTTCTGATTAG 5454 0.4171 MEEEAENNNTQKVEEGGENSNENFNNSKIMSSSEGQSKPKRQMKTPFQLETLEKAYALETYPSESTRLELSEKLGLSDRQLQMWFCHRRLKDKKELPTKKPRKVPPLLDSTSHELNPKLAIEPFNEYGSGSGSGSSPVTRPELRNVVVRSYYESPQSIMELRAIACVEAQLGEPLREDGPILGIEFDPLPPDAFGAPLALAEQQKRPSLPYDSKIYERHEVRTNKAMPRTFPEYTFVPNQSSIRSDTFEQLSQPHLYDAMEGPSRTPPFPIGNEHLPRIHATQSHSSRVRLSSQQDKQVNPYTPPPPVLSQQNKQLVPFPSPPRDNDVVPKREPHTNIAITGMNSQFTDHQIVGQENPLALPGVQVFHNDAVLRVEKKRKSDDARVAKEVEAYEMRMKKELEKQDILRKKNEERMRKEMERQDRERKKEEERLMRERQREEERSKREQKREIERREKYLMKEHLRAEKRKQKEEIRREKEAERRKAALEKANARRIAKESMELIEDEQLELMELAAVSKGLTSIIHIDLDSLQNLESFRDSLCVFPPKSVKLKKPFAIQPWINSEQDVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVAILKVIIKDIEDVARTPTGLGVNQNGAANPAGGHPEIVEGAYTWGFDIRNWQKNLNQLTWPEILRQLALSAGLGPQLRKRSITWSYANDKDEGRSGEDVISTLRNGSAAVSAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLNVLELAEKIQKSGLRDLTTSKTPEASISVALTRDGKLFERIAPSTYRVRTAFRQDPADSESILSEARKKIQIFENGFLAGVDAEDVEREESESDEVDEDPEEDDLINPSSGNPNSEQYDDMYICSVNVKANLGHDVDFIQNELDTDLPCFPENGSKDADCSSSVTRQPVACENVNTGNLDDNIMEIDESKSGESWVQGLTEGEYSDLSVEERLNALVALVGVANEGNSIRIVLEDRLESANALKKQMWAEAQIDKVRLKDDYIGKLDFPSLTGNKFETQDTYPAVEGNHSPLLNININNIKNEAFPSTTENQKGAPATSLLIEKPSTVQDFCTSTGQDNFQTQVAAPYSKRSRSQLKSYISHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEHLDGSWRLIDSEEAFDILLTSLDSRGIRESHLRLMLQKIEKSFKENVRKTTQYAKIGNVEERSIIKTEADETNPVPERHSGADSPSSTLHDLNSGKSETSSSFKIELGKNENEKKASSRRYQDFQKWMWKECYNSSILCAMKFGVKRCKPQVVICEICLNPYFVEDPHCNSCHRTFPSNNGFNFSKHAFQCVGNLSKDICILEHSLPMRTRLLKILLSYMEASVLSEAFGTIWTTDFRKHWGVKLSKSSSIEELLQMLTLFEKALKRDFLSPNFSTTDELLGLSRMSERAAQVSADPESVALLPWVPQTTAALSLRLFEFDSSISYVKLERLEPVEEKEAREYIRLPTRYTPFKPNREVEPAVLDHDVFTKVKSSTNKIVRSGNKRGRGASDYGRPKKLSRRMYNSKRDTGRRNVNVTENLSQKLRLQGRGTQGQVGGRGRRTVRKRRVEKRAVEDLLLGHAAAGHSSKSGKEPFRSFDEEWDVEKASSLTPIHIGVAENSISVEEVESDDNAQGMESYDNAQGMESYDNAQGMESYDIAHGMESDDNALGMESDDNAQAVEYDHGNWEIGYNGISPNRWNRDLVGMSDEDVDAFEDDNDNNNGNVNGFEENFEEDSEEDVMSEGSDHTANRVVNAGGSDLSVSEDSSD 1817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08109 1817 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 23 1817 IPR044977 GO:0006357
Vivi1g08109 1817 MobiDBLite consensus disorder prediction 1233 1277 - -
Vivi1g08109 1817 Pfam DDT domain 566 621 IPR018501 -
Vivi1g08109 1817 ProSiteProfiles HARE-type HTH domain profile. 746 815 IPR007759 GO:0006355
Vivi1g08109 1817 Gene3D - 23 96 - -
Vivi1g08109 1817 MobiDBLite consensus disorder prediction 847 882 - -
Vivi1g08109 1817 SMART HOX_1 37 99 IPR001356 GO:0003677
Vivi1g08109 1817 ProSiteProfiles DDT domain profile. 565 624 IPR018501 -
Vivi1g08109 1817 MobiDBLite consensus disorder prediction 12 44 - -
Vivi1g08109 1817 MobiDBLite consensus disorder prediction 282 299 - -
Vivi1g08109 1817 MobiDBLite consensus disorder prediction 1796 1817 - -
Vivi1g08109 1817 Coils Coil 461 496 - -
Vivi1g08109 1817 ProSiteProfiles 'Homeobox' domain profile. 35 95 IPR001356 GO:0003677
Vivi1g08109 1817 MobiDBLite consensus disorder prediction 1 48 - -
Vivi1g08109 1817 MobiDBLite consensus disorder prediction 406 450 - -
Vivi1g08109 1817 Pfam HB1, ASXL, restriction endonuclease HTH domain 746 814 IPR007759 GO:0006355
Vivi1g08109 1817 MobiDBLite consensus disorder prediction 849 869 - -
Vivi1g08109 1817 CDD homeodomain 40 95 IPR001356 GO:0003677
Vivi1g08109 1817 Pfam Homeodomain 38 94 IPR001356 GO:0003677
Vivi1g08109 1817 MobiDBLite consensus disorder prediction 1760 1817 - -
Vivi1g08109 1817 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 955 998 IPR028942 -
Vivi1g08109 1817 SMART testlast3 565 624 IPR018501 -
Vivi1g08109 1817 MobiDBLite consensus disorder prediction 282 331 - -
Vivi1g08109 1817 Coils Coil 390 455 - -
Vivi1g08109 1817 MobiDBLite consensus disorder prediction 1247 1274 - -
Vivi1g08109 1817 SUPERFAMILY Homeodomain-like 24 94 IPR009057 -
Vivi1g08109 1817 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1135 1207 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08109 Vivi-Chr1 227736693 227745079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08109 31 1615 Homeobox Transcription Factor Family AT1G28420 50.519 0.0 1326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vivi1g08109 WSD 2.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08109 - - psat:127081735 3051.92