Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08107 ATGGGTGTGGATTACTACAATATCTTGAAGGTTGAAAAGAATGCCACAGATGATGAGCTGAAGAAAGCATATCGAAAACTTGCCATGAAATGGCACCCTGATAAAAATCCCAACAATAAAAAAGAAGCCGAAACCAAATTCAAACAGATATCCGAAGCATACGAGGTTCTAAGTGATTCACAGAAAAGAGCAATTTATGATCAATATGGAGAAGAAGGACTCAAAGGTCAAGTACCAGCACCTTCTCAAGAAGGTGGTGCTGGTGGAGCTTCATTCTTCCAAACTGGAGACGGAGCAACGACGTTTAGGTTTAATCCAAGAAACGCAGATGATATATTTGCTGAGTTTTTTGGGTTTTCAAGTCCGTTTGGAGGAATGAGTAATGGTGGAAGTGGTGGTATGAGAGGTGGTTCTAGATCGTTTGGTGGAATGTTTGGGGATGATATGTTTTCTTCGTTTGATGATGGTGGCAGCAGGACTATCCACCGTCAGGGTCCTCGGAAGGCGGCTAATATTGAGAATAGGCTGCCTTGTAGCCTTGAAGAGCTCTATAAAGGTACCACCAAGAAGATGAAGATCTCAAGAGAAATTGCAGATGCAAGTGGGAAAACTATGCCTGTGGAGGAAATCCTAACAATAGAAGTGAAACCAGGATGGAAAAAGGGAACAAAAATCACATATCCTGAGAAAGGAAACGAGCAACCAAATGTGATACCAGCAGATCTCGTCTTCGTCATTGACGAAAAGCCGCACAATGTATTTACAAGAGATGGAAATGATTTGGTGGTGACACAGAAGATATCACTTGCAGAAGCATTAACAGGTTACAATGTTCGTCTCACAACATTAGATGGAAGGGTTTTGAACATTCCTATAAACAATGTGATTCATCCAAACTATGAAGAGGTTGTTCCAAAGGAAGGGATGCCTATTCCAAAAGATCCTTCAAAGAAGGGTAATCTTAGGATTAAGTTTAATGTTAAGTTTCCTACAAGGTTGACATCTGAACAGAAAGCTGGGATTAAGAAACTTTTGGCACCATAG 1044 0.408 MGVDYYNILKVEKNATDDELKKAYRKLAMKWHPDKNPNNKKEAETKFKQISEAYEVLSDSQKRAIYDQYGEEGLKGQVPAPSQEGGAGGASFFQTGDGATTFRFNPRNADDIFAEFFGFSSPFGGMSNGGSGGMRGGSRSFGGMFGDDMFSSFDDGGSRTIHRQGPRKAANIENRLPCSLEELYKGTTKKMKISREIADASGKTMPVEEILTIEVKPGWKKGTKITYPEKGNEQPNVIPADLVFVIDEKPHNVFTRDGNDLVVTQKISLAEALTGYNVRLTTLDGRVLNIPINNVIHPNYEEVVPKEGMPIPKDPSKKGNLRIKFNVKFPTRLTSEQKAGIKKLLAP 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08107 347 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vivi1g08107 347 FunFam DnaJ subfamily B member 13 251 331 - -
Vivi1g08107 347 CDD DnaJ 4 59 IPR001623 -
Vivi1g08107 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 253 339 IPR008971 GO:0006457|GO:0051082
Vivi1g08107 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 166 257 IPR008971 GO:0006457|GO:0051082
Vivi1g08107 347 FunFam DnaJ subfamily B member 13 3 127 - -
Vivi1g08107 347 SMART dnaj_3 3 62 IPR001623 -
Vivi1g08107 347 Pfam DnaJ domain 4 67 IPR001623 -
Vivi1g08107 347 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vivi1g08107 347 Pfam DnaJ C terminal domain 172 330 IPR002939 -
Vivi1g08107 347 Gene3D DnaJ domain 3 130 IPR036869 -
Vivi1g08107 347 Gene3D - 251 331 - -
Vivi1g08107 347 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
Vivi1g08107 347 Gene3D - 170 249 - -
Vivi1g08107 347 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 345 - -
Vivi1g08107 347 FunFam Dnaj homolog subfamily b member 168 249 - -
Vivi1g08107 347 CDD DnaJ_C 170 333 - -
Vivi1g08107 347 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vivi1g08107 347 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vivi1g08107 347 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vivi1g08107 347 PRINTS DnaJ domain signature 42 62 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08107 Vivi-Chr1 227721625 227723311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08107 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 2.00e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08107 K09510 - cave:132172416 531.946