Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08093 ATGAACCTTGTTGAACATATTACCTATGACACAATCATGGCAACTCTATCAATATCTCTCATAATTCTTGCCATCATCCTCTTCTTCCTTTGTAAAAAGAAACCAGTTGAATCAGAAGAAACACTTCCAGTGAAACACAGTGCTCGTGCATACCCTTTAACAGAAATCGATGCTGCCACCAATGGATTCAACCATAGGAGAATCATTGGAAAAGGTCGTTTAGGAACGGTTTATGCAGGAGTACTAGAATCAGAAGAACTCGTAGCTGTGAAACGCATTCATCCTGTTCTTGTGTTAAGCAACGCAGGATTCGGTTTCTCATCGGTGATCAAATGGCTCTCTTTAGCTCATCACCCTAACGTTGTTCCCATAATAGGATTCTCAGAAGCACCAGGTGAAAGAATTATAGTGATGGAGTTTGTTCGAATGGCAAATTTGGAGTTTTACTTGCATGAAAATCATGAAGGATTTTCTTCCTCACTTTTGGATTGGAGCAAGAGGTTCAAGATTGCAGCTGGAGTAGCTAAAGGGTTACAATATCTTCATGAAGTGGTAGCACCAAATATTGTACATGGTTGTGTTAAGTCTTCTAATATTCTCATTGATGTGAATTTTTGTGCTAGGGTTTCTGATTATGGACTTAATTTTTTAGGGCTAGTTGACAAAAGAGGGTTAGTTGGTTATGTGGATGATGAATATTGGAAAGGTGGGGTTTGTAAGGAAAGTGATGTTTATGGGTTAGGGGTGATTTTGTTGGAGCTTTTAAGTGGGAGAGGGTGTGAGGGTGGATTATTGGTGAAATGGGCATTGCCTTTGATTAAGGATATGAGATTTAGTGAAGTTTTGGATCCTAGGTTGGTGATTCCTAGTGATATGAAAGCTATTGTTAGGTTAGCAAAAGTTGCTTTAGCTTGTGTTGGTAATTCAAGGAAATGTAGGCCTTGTGTGATTCATGTGGCAACCATTTTGAATGATTTAGAGATGGAAGTTTGTTTCTTGTCAAATTAG 1008 0.3869 MNLVEHITYDTIMATLSISLIILAIILFFLCKKKPVESEETLPVKHSARAYPLTEIDAATNGFNHRRIIGKGRLGTVYAGVLESEELVAVKRIHPVLVLSNAGFGFSSVIKWLSLAHHPNVVPIIGFSEAPGERIIVMEFVRMANLEFYLHENHEGFSSSLLDWSKRFKIAAGVAKGLQYLHEVVAPNIVHGCVKSSNILIDVNFCARVSDYGLNFLGLVDKRGLVGYVDDEYWKGGVCKESDVYGLGVILLELLSGRGCEGGLLVKWALPLIKDMRFSEVLDPRLVIPSDMKAIVRLAKVALACVGNSRKCRPCVIHVATILNDLEMEVCFLSN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08093 335 FunFam serine/threonine-protein kinase-like protein ACR4 30 140 - -
Vivi1g08093 335 SUPERFAMILY Protein kinase-like (PK-like) 39 321 IPR011009 -
Vivi1g08093 335 Gene3D Phosphorylase Kinase; domain 1 29 140 - -
Vivi1g08093 335 Pfam Protein tyrosine and serine/threonine kinase 66 319 IPR001245 GO:0004672|GO:0006468
Vivi1g08093 335 FunFam Receptor protein kinase CRINKLY4 142 330 - -
Vivi1g08093 335 PANTHER OS01G0253100 PROTEIN 46 325 - -
Vivi1g08093 335 ProSiteProfiles Protein kinase domain profile. 63 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08093 335 Gene3D Transferase(Phosphotransferase) domain 1 143 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08093 Vivi-Chr1 227255919 227258623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08093 40 323 Receptor kinase-like Gene Family AT3G59420 38.255 6.91e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi1g08093 PK_Tyr_Ser-Thr 2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08093 - - mtr:11441273 566.229