Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08090 ATGACATGGTGCAATGAGTCTGATGTTAATGATCATATAAAGCTCAATGAAGAATTTCAAACAATAAAATGCCCCTCATGTGGCCATGATATTGAAGTAAAAAATCAGGGTGGAAATGGAATTCATGATTTGCCTGGTTTACCAGCTGGAGTGAGATTTGATCCAAATGACATAGAAATATTGGAGCATTTAGAGGCAAAAGTGATGTCTAATATGTGCAAGATTCATCCACTTATTGATGAGTTTATTCCAACACTTCAAGGAGAAAATGGAATTTGTTATACTCATCCAGAAAAACTACCAGGAGTTAGCAAAGATGGACAAATCCGCCATTTTTTTCATAGGCCATCTAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACCGACAAAGAAGGAGGCGAAACAAGATGGCACAAAACAGGCAAAACTAGAGCAATTGTTGTTAATGGCATTGTCAAGGGTTTTAAAAAGATACTAGTACTCTACACAAACTATAGCAAGGAAGGAAAACCAGAGAAAACTAATTGGGTGATGCATCAATACCATCTTGGTAGCAATGAAGAAGAAAAAGATGGAGAGTTAGTTGCTTCAAAGGTGTTTTACCAAACACAACCAAGACAAAGTGGTAACTCCATTAATGTAAGAGATTCATATGACAAAGGAAGTGGCCATAGTGATAGTGCAACACCTAACAATTTAGGTATGGTGGAATGCTACAATGGTTCTTATACAAATTATGAGCATGTCCATGTTGGTCATCATAGGGAAAGCTTGCCACAATTTACTACAATGGATGCAAACAAAGTAAGAGTGCAGGAGAGAAAGTAA 840 0.3702 MTWCNESDVNDHIKLNEEFQTIKCPSCGHDIEVKNQGGNGIHDLPGLPAGVRFDPNDIEILEHLEAKVMSNMCKIHPLIDEFIPTLQGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDKEGGETRWHKTGKTRAIVVNGIVKGFKKILVLYTNYSKEGKPEKTNWVMHQYHLGSNEEEKDGELVASKVFYQTQPRQSGNSINVRDSYDKGSGHSDSATPNNLGMVECYNGSYTNYEHVHVGHHRESLPQFTTMDANKVRVQERK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08090 279 Gene3D NAC domain 57 210 IPR036093 GO:0003677|GO:0006355
Vivi1g08090 279 SUPERFAMILY NAC domain 42 206 IPR036093 GO:0003677|GO:0006355
Vivi1g08090 279 MobiDBLite consensus disorder prediction 210 235 - -
Vivi1g08090 279 FunFam NAC domain-containing protein 73 56 210 - -
Vivi1g08090 279 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 17 220 IPR044799 GO:0003700
Vivi1g08090 279 ProSiteProfiles NAC domain profile. 47 206 IPR003441 GO:0003677|GO:0006355
Vivi1g08090 279 Pfam No apical meristem (NAM) protein 48 187 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08090 Vivi-Chr1 226890565 226896124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08090 1 216 NAC Transcription Factor Family AT4G28500 67.100 2.16e-108 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g08090 NAM 6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08090 - - gmx:100809389 410.609