Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08089 ATGGCGGCCGCTGTTGTTGGTGAAGCTTTTCTGTCTGCTTTCATTGAAGTTGTCCTTGACAGACTTGCTTCTCCTCAGGTTGTTGACTTGATCCGTGGGAAGAAACTTGACGTCAATTTGGTTCAACGGTTGAAGAATACTCTTTATGCTGTTGAAGCCGTGCTTAACGATGCTGAACAGAAGCAGATTCGTGACTCTACTGTTAACAAATGGCTTGATGATCTCAAAGATGCTCTCTATGTTGCTGATGACATTCTCGATCGGATTTCTACTAAAGCTGCAACTTCTCATAAGAACAAAGAGGTGAGTACTGTTAACTACTTTTCTCGCTTTTTCAACTCTGAGGAAAGGGATATGGTTTGTAAGCTGGAAGATATAGTTGCTAAGATTGAATACATTCTCAATTTCAAAGATATTCTTGGCCTTCAACATATTGCAACTCATCACTCATCATGGAGATCTCCATCAACCTCTTTAGAAGACAGATCTAACATATTTGGTAGGGATCAAGACAAAGAGGCCATTCTCAAATTACTGTTAGATGATGATAATGATAAGGATGAGATTTCTGTGATCCCTATAGTTGGCATGGGTGGAGTGGGAAAAACTACTTTAGCTCAATCTGTGTACAACCAGGACGCTGTCAAGCAGAAATTCAATGTTCAAGCATGGGCTTGTGTTTCTGATGATTTTGATGAACTGAATGTTGCAAAGGCCATCTTGGAGTCAATTGTGGGGTATGCTTGTAGCATAAATAACAAAGAGTTGCTTCATCGTGATTTGAAGGAAAAACTATCTGGAAAAAAGTTCTTAATTGTTTTGGATGATGTATGGACTGAGGATTATAACGGCTGGAATTCTCTTTTAAGGCCTCTTCAATATGGAGCCAAAGGAAGTAGAATTCTTGTAACAACTCGTATCCAAAAAGTTGCTTCTATGGTACAAACTTTTCATGATTACTCGCTAGAGCAATTGTCATATGAAGATTGTTGGTCAGTGTTTGCCAACCATGCTTGCCTTTCTCGAGAAGAATTCAGTGAGAATAAGAATCTCCACAGAATTGGCAAAGAGATTGTTAGAAAGTGTAAGGGATTGCCTTTAGCAGCACAATCACTTGGGGGCTTGTTGCGAAGTAAACGGGACATCAAGGATTGGGATAATATACTAAATAGTAACATTTGGGAAAATGAGAGTAATATCATTCCAGCTCTAAGAATTAGTTATCATTATCTCCCTCCTTATTTGAAACGCTGCTTTGTGTATTGTTCATTGTTTCCCAAGGATTATAAATTTGAAAAAGATGAATTAATCTTGTTGTGGATGGCGGAGGATCTTTTACATCCTTCAGAAAGTAACAAGACTTTAGAAGAAGTTGGTTATGGCTATTTTAATGACTTAGCTTCTAGATCATTTTTTCAACGTTCGGGAAGTGGGAACAGCTACCAGCATTTTGTGATGCATGATCTGGTGCATGACTTAGCAATATTGCTCGGTGGAGATTTCTATTTCAGAACAGAAGAACTTGGGAAAGAAACGAAGATTGGTACCATGACCCGTCATTTATCATTTAGTAGCTTCAGTGGTCAAGTCTTTGAAAGCTTTGATATTTTTGGCCGAGCAAAACATCTTAGGACGTTTTTGACAAACAATTTTAAACTCCCTTCTTCCAATATCGAAAAGGCATCATGCATCATTTTATCCACATTGAAGAGCTTGAGAGTTTTGTCATTTCACTACTCTCCATATCTTGATGCATTGCCCGATTCGATATGTGAACTGATCCATTTGCGTTACTTGGATCTCTCTTCCACAGCAATTAAAACATTACCAAAGTCATTGTGTAATTTGTATAATCTACAAACGTTGAGGTTGCGCTATTGTAAAGAACTAACTTGGCTTCCCAATGACATGCAAAATCTTGTAAATTTGCGCCATCTTGATATCCGTGGAAGTGATAAGTTAGAAGAAATGCCTGTTGGAATGAGCAAATTAAATCATTTGCATTATTTGAGTTATTTTGTTGTGGGAAAACATGAAGAGAAAGGGATCAAGGAACTGGGGACACTTTCAAATCTTCACGGATCACTTTCCATTAAGAAATTAGAGAATGTTACCAACAGCTTTGAAGCATCAAAGGCAAAGATAATGGATAAGAAATACCTTGAAGAATTATCGTTTGTATGGTCTCAAGATGCAAAGGACGATTTTAAGAATTCACAAAGCGAGATGGATATACTTGGCAATTTACAACCTACCAAGAACCTGAAAAGGCTAGATATTGATGGATACAGAGGCACAAAATTTCCAGAATGGGTTGCAGATCCTTCCTACCACAATTTGACTGAGTTATCTTTATATAATTGTCATAATTGTTGCATCCTGCCCCCACTAAGACAACTTTGCTGTCTTAAGAATTTGAGAATCAGTAAAATGAATATGATGATGGAGATTATTGGATCTGAATATGGTGATTCTTTTTCGGAGACGCTTTTTCCTTCCCTTGAATATCTTGAGTTCCATGACATGCCTTGTTGGGAAGTGTGGCATCATCCCCATGAATCATATGCTCCCTTCCCTGTATTGAAGACCCTTTTGATTATTGATTGTCCTATGTTACGAGGAAATTTGCCATCTCATCTTCCTGCTTTGGAAGAACTTGTGATTAGACGATGCTACCAACTTGCTTCATCTCTCCCAAGGTCCCTTGTCATAACTAAACTAGAGGTTTATGAAAGCAATAAAGTAGCACTACCAGAGCTACTGCCACTTTCATTAAAAGAGTTAAAAACTCAAGGAAGATCAGTGACAGAGTCCGTGTTTGAAGCCTTCAGAGTCTCCATACCAACTTCTCTTCAAGATTTAGACATTGAGGATTGTTCATCTGCAATATCATTTCCGAGAGATTGTTTGCCCGCATCCTTGCAGCGCCTAACTATCAAGAATTGTGAAAATCTAGATTTCCCAATGCAAAACGACCAACTCGAGTCACTTTGGTATTTGTACATAGAAACGAGCTGTGTTTCTCTTAGAACCCTCCCATTGGAAACCTTTCCAAATCTTCTACGTCTGGAAATCATAAACTGTGAAAACATTGAAAATCTTTCCGCTTTGAAGAATCTTCAAAATCTGGTTGAAATTGGGATTAGAGACTGCCCCAATTTTGTATCATTCCTAGGAGAGGGGTTGTCTGCTCCAAACTTGAATACATTGCATGTCTCCTGCTGCGTTAATTTAAAGTCACCTCCTTGTCACATAGATACTCTTCTCCCAATGTTAAAATTTTTGACAATAGAAGATTGCCCAGAAATTGAGACTTTTCCTGAAGGAGTGCCCAGTCCTTCCCCAAGGAGGATTTTGCGTTGCTACCTCCCTCTCTTACCTCCCTTGAGCTATGGAGTATGTCAAGTTTGCACACATTGGAGTGCAGGGGGCTTCTCCACCTCACGTCCCTCCAAAAACTAA 3462 0.3882 MAAAVVGEAFLSAFIEVVLDRLASPQVVDLIRGKKLDVNLVQRLKNTLYAVEAVLNDAEQKQIRDSTVNKWLDDLKDALYVADDILDRISTKAATSHKNKEVSTVNYFSRFFNSEERDMVCKLEDIVAKIEYILNFKDILGLQHIATHHSSWRSPSTSLEDRSNIFGRDQDKEAILKLLLDDDNDKDEISVIPIVGMGGVGKTTLAQSVYNQDAVKQKFNVQAWACVSDDFDELNVAKAILESIVGYACSINNKELLHRDLKEKLSGKKFLIVLDDVWTEDYNGWNSLLRPLQYGAKGSRILVTTRIQKVASMVQTFHDYSLEQLSYEDCWSVFANHACLSREEFSENKNLHRIGKEIVRKCKGLPLAAQSLGGLLRSKRDIKDWDNILNSNIWENESNIIPALRISYHYLPPYLKRCFVYCSLFPKDYKFEKDELILLWMAEDLLHPSESNKTLEEVGYGYFNDLASRSFFQRSGSGNSYQHFVMHDLVHDLAILLGGDFYFRTEELGKETKIGTMTRHLSFSSFSGQVFESFDIFGRAKHLRTFLTNNFKLPSSNIEKASCIILSTLKSLRVLSFHYSPYLDALPDSICELIHLRYLDLSSTAIKTLPKSLCNLYNLQTLRLRYCKELTWLPNDMQNLVNLRHLDIRGSDKLEEMPVGMSKLNHLHYLSYFVVGKHEEKGIKELGTLSNLHGSLSIKKLENVTNSFEASKAKIMDKKYLEELSFVWSQDAKDDFKNSQSEMDILGNLQPTKNLKRLDIDGYRGTKFPEWVADPSYHNLTELSLYNCHNCCILPPLRQLCCLKNLRISKMNMMMEIIGSEYGDSFSETLFPSLEYLEFHDMPCWEVWHHPHESYAPFPVLKTLLIIDCPMLRGNLPSHLPALEELVIRRCYQLASSLPRSLVITKLEVYESNKVALPELLPLSLKELKTQGRSVTESVFEAFRVSIPTSLQDLDIEDCSSAISFPRDCLPASLQRLTIKNCENLDFPMQNDQLESLWYLYIETSCVSLRTLPLETFPNLLRLEIINCENIENLSALKNLQNLVEIGIRDCPNFVSFLGEGLSAPNLNTLHVSCCVNLKSPPCHIDTLLPMLKFLTIEDCPEIETFPEGVPSPSPRRILRCYLPLLPPLSYGVCQVCTHWSAGGFSTSRPSKN 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08089 1153 Gene3D - 407 495 IPR036388 -
Vivi1g08089 1153 Pfam Rx N-terminal domain 10 100 IPR041118 -
Vivi1g08089 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 422 IPR027417 -
Vivi1g08089 1153 SUPERFAMILY RNI-like 831 1103 - -
Vivi1g08089 1153 Coils Coil 41 61 - -
Vivi1g08089 1153 Pfam NB-ARC domain 169 390 IPR002182 GO:0043531
Vivi1g08089 1153 Gene3D Ribonuclease Inhibitor 984 1120 IPR032675 -
Vivi1g08089 1153 FunFam Probable disease resistance protein At1g63360 408 496 - -
Vivi1g08089 1153 SUPERFAMILY L domain-like 485 906 - -
Vivi1g08089 1153 PANTHER DISEASE RESISTANCE PROTEIN RP 43 891 IPR044974 GO:0006952
Vivi1g08089 1153 PRINTS Disease resistance protein signature 638 654 - -
Vivi1g08089 1153 PRINTS Disease resistance protein signature 362 376 - -
Vivi1g08089 1153 PRINTS Disease resistance protein signature 264 278 - -
Vivi1g08089 1153 PRINTS Disease resistance protein signature 191 206 - -
Vivi1g08089 1153 Gene3D Ribonuclease Inhibitor 534 930 IPR032675 -
Vivi1g08089 1153 Gene3D - 15 131 - -
Vivi1g08089 1153 Gene3D - 149 319 IPR027417 -
Vivi1g08089 1153 Gene3D - 324 406 IPR042197 -
Vivi1g08089 1153 FunFam Probable disease resistance protein At1g61300 150 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08089 Vivi-Chr1 226869139 226872960 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08089 188 671 WRKY Transcription Factor Family AT5G45050 22.624 1.66e-13 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08089 - - vvo:131644921 1560.81