Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08073 ATGGGGTTAATCGATCTCAACACTACTGAAGATGATGAAACACCTTATTCAGCTATTTCTTCTTCCTCTTCTTCTACTCACTCTGGTATAAGCACTTCTGCTTCAGCTATGGTTCTTCCTCCTCCTGCTTCTTCTCCTTCTCCTCCTCCGGCTCAGGGTTCTGTTTGTTTGGAGCTATGGCATGCTTGTGCTGGTCCTTTGATCTCTTTGCCCAAGAAAGGAAGCATTGTTGTGTATGTTCCACAGGGTCACTTTGAACAGGCTCATGATTTTCCTGTTTCTGCTTGTAGTATTCCTATTCCACCTCATGTTTTCTGTCGTGTTCTTGATGTTAAGCTCCATGCTGAGGAAGGGAGTGATGAAGTGTATTGCCAGGTCTTGTTGGTTCCTGAAAATCAGCAAGTGGAGCAAAATGTGCGGGAAGGGGTAATCGATGCGGATGCGGAAGAGGAGGATACTGAAGCTATTGTGAAGTCTACAACTCCTCATATGTTCTGCAAGACTCTCACAGCTTCTGATACTAGCACTCATGGAGGATTCTCGGTGCCTCGTCGTGCAGCTGAAGATTGCTTTCCTCCGCTGGATTACAGCCAGCAGAGACCTTCTCAAGAGCTTGTAGCTAAGGATCTGCATGGCCTGGAATGGAGGTTTCGGCACATTTATAGGGGGCAGCCAAGGAGGCATTTGCTGACAACTGGGTGGAGTGCGTTTGTGAACAAGAAGAAGCTTGTGTCTGGTGATGCTGTGCTGTTTCTTAGGGGTGATGATGGAGAGCTGAGATTAGGTATCCGTAGGGCAGTTCAGTTGAAAGGTTCTGGTTCCTTTGGAGCTTCTGGCATGCAATTGGATCCTGGCTCTCTCATGGACGTTGTGAATGCCTTATCCAAAAGATCTGCGTTCAGTGTTTGCTACAATCCAAGCTCTTCGGATTTCATCATACCTGTTAACAAGTTCATAAAGAGCCTTGATTGCTCTTACTCTGCTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAACGAAGAGTCACTGGATTAATTGCTGGTATAAGTGACGTCGATCCTCATAGATGGCCTGGATCTAAATGGAAATGCCTATTGGTGAGGTGGGATGACATAGAAGCATCGAGGCATAACAGGGTTTCCCCTTGGGAAATCGAGCCATCTGGTTCTGCTTCCTCTACCAGTAACCTGATGGCAGCAAGTTTGAAGAGGAGCAGGATTGGATTCACTTCATCCAAGCTAGATTTTCCAGTTCCCAATGGGATTGGTGTGTCAGACTTTGGGGAATCATTGAGGTTCCGAAAGGTCTTGCAAGGTCAAGAAATTATGGGCATGAATACTCCCTATGACAGTATTAATGCTCAGAGTCCCCGGTTATACGAGCTAGGGAGATGTTATCCCGGTGCAAACTGTTCCGGGATTGCCGCACCAGGAAACATCAGAATGCCTCAGGCAACTTCTGATTTTCCCTGTAATGGCATAGGCTTTGGTGAATCTTTCCGATTCCAAAAGGTCTTGCAAGGTCAAGAAATTCTTCCGTGTCCACCACCCTACGGTCGATCCTCGTTTGACGAGTCCCGTGGAAATGGTTTCCTTGGACGCTACGATGGTTATCAACTACTCGGTGGTTCCAGAAACGGATGGCCAGCACAGATGCACGACAATCCTTCACATTTGCACTCGTCTGTTACAGCTGGACAAGTTTCATCTCCATCATCTGTTTTAATGTTCCAGCAGGCTGTTAATCCAGTTTCAAACTCCCGTTATGATAACGCTAATCGCAATCAGGGTTCGTACATATCTGAACTGAAAAGTGGAATGTTCACGTCTTCCCTACTCGACAAACCTATTCAGGAAAGCACAAATTCTCTCGGTATGCAGAATTTTCTTAATAACAACCAGTTGGCTCGTGATTCGGCCTCAGCACTAAGAGGCAATCAAGAAAAGAACCCGACATATAAAAGTGGCTGCAGACTCTTCGGATTTTCATTAACCGACGACACCTACGTTGCAAACAAAGAAGCCGCTCTTGCCTCAAACATCACTTCTCAATTCAATAAGGACTACGAAGGCGGTTGA 2091 0.4625 MGLIDLNTTEDDETPYSAISSSSSSTHSGISTSASAMVLPPPASSPSPPPAQGSVCLELWHACAGPLISLPKKGSIVVYVPQGHFEQAHDFPVSACSIPIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENQQVEQNVREGVIDADAEEEDTEAIVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAVQLKGSGSFGASGMQLDPGSLMDVVNALSKRSAFSVCYNPSSSDFIIPVNKFIKSLDCSYSAGMRFRMRFETEDAAERRVTGLIAGISDVDPHRWPGSKWKCLLVRWDDIEASRHNRVSPWEIEPSGSASSTSNLMAASLKRSRIGFTSSKLDFPVPNGIGVSDFGESLRFRKVLQGQEIMGMNTPYDSINAQSPRLYELGRCYPGANCSGIAAPGNIRMPQATSDFPCNGIGFGESFRFQKVLQGQEILPCPPPYGRSSFDESRGNGFLGRYDGYQLLGGSRNGWPAQMHDNPSHLHSSVTAGQVSSPSSVLMFQQAVNPVSNSRYDNANRNQGSYISELKSGMFTSSLLDKPIQESTNSLGMQNFLNNNQLARDSASALRGNQEKNPTYKSGCRLFGFSLTDDTYVANKEAALASNITSQFNKDYEGG 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08073 696 CDD B3_DNA 163 265 IPR003340 GO:0003677
Vivi1g08073 696 Pfam Auxin response factor 291 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi1g08073 696 SUPERFAMILY DNA-binding pseudobarrel domain 158 271 IPR015300 -
Vivi1g08073 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 54 676 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi1g08073 696 Gene3D - 163 267 IPR015300 -
Vivi1g08073 696 FunFam Auxin response factor 325 396 - -
Vivi1g08073 696 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Vivi1g08073 696 Gene3D - 325 399 - -
Vivi1g08073 696 FunFam Auxin response factor 163 267 - -
Vivi1g08073 696 MobiDBLite consensus disorder prediction 1 51 - -
Vivi1g08073 696 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Vivi1g08073 696 MobiDBLite consensus disorder prediction 10 40 - -
Vivi1g08073 696 SMART B3_2 165 267 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08073 Vivi-Chr1 226471428 226475803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08073 164 517 B3 DNA Binding Superfamily AT2G33860 60.942 1.04e-141 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi1g08073 B3 3.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08073 K14486 - gmx:100789906 986.482