Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08063 ATGGCGGCCGCTGCTGTTGGTGAAGCATTTCTCTCTGCCTTCATTGAAGTTGTCCTTGACAGACTTGCTTCTCATCAGGTTCTTGACTTGATCCGTGGGAAGAAAATTGACATCAATTTGGTCCAAAGGTTGAAGAACACTCTTTATGCTGTGGAAGCTATGTTGAACGATGCTGAACAGAAGCAGATTCATGACTCTTCTGTTAACAAATGGCTTGATGATCTCAAAGATGCTCTCTATCTTGCTGATGACATTCTCGACCACATCTCTACCAAAGCCGCTCTTTCCAACCACAACAAGCAGGTCAGTACTGCTAACTATTTCTCTCGCCTTTTCAACTCTGAGGAAAGGGATTTGGTTGGTAAGCTGGAAGATATAGTTGCTAGGCTTGAATACATTCTCAATTTCAAAGATATTCTTGGCCTTCAACATATTGCAACTCATCACTCATCCTGGAGATCTCCATCAACCTCTCTAGATCACCCATCTAACATATTTGGTAGGGATCAAGACAAAGAGGCCATACTCAAATTACTCTTACATGATGATGATGATAACATCTCTGTGATTCCCATAGTTGGTATGGGTGGGGTGGGAAAAACTACCTTAGCCCAATCTGTGTTTAATACTATAAAGCAAAATGTTCCAGCGTGGGTTTGTGTTTCCGATGATTTCGATGAACTCAAGGTAACCAAGGCCATCTTAGAGGCAGTTGCAGGGAGATCTTGTAATATAAATAACAAAGAGTTACTTCATCTTGATTTGAAGGAAAGACTGTCTGGAAAAACGTTCTTGATTGTTTTGGATGATGTATGGACTGAAGATTATGACAGTTGGAACTCTCTTATAAGGCCTCTTCAATATGGAACTAAGGGAAGTAAAGTTCTTGTAACTACCCGTATTGATAAAGTTGCTTCAATGGTCCAAACTTTTCAGGCTTACCCTCTTCAGCAATTGTCCGATGAAGATTGTTGGTCCGTGTTTGCAAACCATGCATGTCTTCCTCAAGAAGAATCCAATGAGTACACGGATCTCCAAAAGACTGGCAGAGAGATTGTTAGAAAATGTAAAGGATTGCCTTTAGCAGCACAATCACTTGGGGGCTTGTTGCGACGAAAACGTGACATTAGGGATTGGAATAATATACTAAAGAGTAACATTTGGGAAATCGAGAGTAAGATCATTCCAGCACTAAGAATTAGTTATCATTATCTCCCTCCCTATTTGAAACGTTGCTTTGTTTATTGTTCCTTATATCCTAAGGATTTTGAATTTAATAAAGACGATTTGATTTTGTTGTGGATGGCTGAAGATCTTTTACCGTCTCTAAAAAATGGGAAGACTTTAGAAGAAGTTGGTAATGAGTATTTTAATGATTTAGCTTCAAGATCGTTCTTTCAACGTTCGGGAAGTGGGAACCAATACCGGCGTTTTGTGATGCATGATCTGGTGCATGATTTAGCAACATTGCTTGGTGGAGAATTCTATTTCAGAACAGAAGAACTTGGGAAAGAATTGAAGATCAGTACCAAGACTCGTCATTTGTCATTTATTGCGTTCAGTGATCCTGTCTTGGAAAACTATGATGTTTTCAGCAGAGCAAAAAACCTTAGAACGTTTTTGACAACGAGTTTTAGATTTCCTCGAGTCAACTATGAAAAGGCACCATGCATCATTTTGGAGAATTTGAAGTGTTTAAGAGTTTTGTCATTTCGATCTTTGCATAATGTTGACTCATTGCCTGATTCAATAGATGAACTAATCCATTTGCGTTATTTGGACCTCTCTTTCACAGATATACAAACTTTGCCGGAGTCATTGTGTAATTTGTATAATCTACAAACGTTGAAGTTGCGCGGTTGCCTACAGCTAACCATGCTTCCAAATGACATACAAAATCTTGTAAATTTGCGCCATCTTGATATTAGTGGAATGAATGAGTTAGAAGAGATGCCTAGAGAAATGAGCAAATTAAATCATTTGCAACATCTGAATTGCTTTGTTGTGGGCAAGCATGAAAAGAATGGGATCAAGGAACTGGGAACTCTTTCAAATCTTCATGGATCACTTTTTATTCGTAAATTGGAGAATGTTACCAATAGCTTGGAAGCATCAAAGGCACATATCATGGATAAGAAGTACCTTGAGGGATTATCGTTTGATTGGTCTGAAGATGCAAAGGACCATTTTACAAATTCACAAAGTGAGATGGATATACTTGGAAAGTTACAGCCTGCCAAGAACTTGAAATGGCTAATTATATCTGGATACAGAGGCACAAGATTTCCATATTGGGTTGGGGATCCTTCCTACCACAATATTACTCGGCTAACTCTGTCTAATTGTCAAAATTGTTGCATCCTTCCACCACTTGGACAATTACGCTCTCTTAAGGACTTGACAATCTATGCAGTGAGTATGCTGGAGACTATTGGATCTGAATATGGTGATTCCTTTTCAGGAGTCCTCTTTCCCTCCCTTAAACGTCTGGAGTTTAGTAAGATGCCATGTTGGGAAGTGTGGCATCATTCTCATGAGTCAGATGTTTCATTTCCTGTATTAAAGTCTCTTGTGATTGCTGATTGTCCCAGATTACATGGAAGTTTGCCATCTCATCTTCTTGCCGTGGAAACAATTAAGATTAAACATTGCAACCAACTCGACTCTTCACTCCCAAGTGCTCCTGCCATCCGCAAGTTATGCATAATTGAAAGCAATAAAATAGGCTTGCATGAACTACCCATTTCATTGGAAGAATTAAAAATTCAAGGAAGAGAAATGACAAAGTTCGTCTTTGAAGCCATTGCCATCAGCCTAACATCTCTTCAAATTTTAGATATCAGGGACTGTTTGTCTGCGATATCATTTCCGGGAGATTGTTTACCCTTTTCCTTAAAGAGTTTGTCCATCAGAAATTCTAGTAATCTGAATTTTCCAAAGCAAAACCACCAACATGAGTCACTTCAGTCTTTGAGGATAGATAGGAGTTGTGATTCTCTCACAACCCTCCCATTGGAGATCTTTCCAAACCTCGTTTCTCTCGGAATCTATAATTGTGAAAACATAGAATGCCTTTCAGCTTCGAAAATTCTTCCAAATCTCATTGATATTGACATTAGAGACTGCCCTAAATTTGTATCATTCCCAAGAGAAGGATTGTCTGCACCCAACTTGACATCGTTGCGTGTCTCCCGGTGCCTTAATTTAAAGTCATTGCCTTGTCACATAAATAATCTTTCTAAGGTAACCCCTCTTTTAATTTGCCCCCAGCAGAGTCGCCAGTTCTGTAACACGGTGAACTGA 3303 0.3921 MAAAAVGEAFLSAFIEVVLDRLASHQVLDLIRGKKIDINLVQRLKNTLYAVEAMLNDAEQKQIHDSSVNKWLDDLKDALYLADDILDHISTKAALSNHNKQVSTANYFSRLFNSEERDLVGKLEDIVARLEYILNFKDILGLQHIATHHSSWRSPSTSLDHPSNIFGRDQDKEAILKLLLHDDDDNISVIPIVGMGGVGKTTLAQSVFNTIKQNVPAWVCVSDDFDELKVTKAILEAVAGRSCNINNKELLHLDLKERLSGKTFLIVLDDVWTEDYDSWNSLIRPLQYGTKGSKVLVTTRIDKVASMVQTFQAYPLQQLSDEDCWSVFANHACLPQEESNEYTDLQKTGREIVRKCKGLPLAAQSLGGLLRRKRDIRDWNNILKSNIWEIESKIIPALRISYHYLPPYLKRCFVYCSLYPKDFEFNKDDLILLWMAEDLLPSLKNGKTLEEVGNEYFNDLASRSFFQRSGSGNQYRRFVMHDLVHDLATLLGGEFYFRTEELGKELKISTKTRHLSFIAFSDPVLENYDVFSRAKNLRTFLTTSFRFPRVNYEKAPCIILENLKCLRVLSFRSLHNVDSLPDSIDELIHLRYLDLSFTDIQTLPESLCNLYNLQTLKLRGCLQLTMLPNDIQNLVNLRHLDISGMNELEEMPREMSKLNHLQHLNCFVVGKHEKNGIKELGTLSNLHGSLFIRKLENVTNSLEASKAHIMDKKYLEGLSFDWSEDAKDHFTNSQSEMDILGKLQPAKNLKWLIISGYRGTRFPYWVGDPSYHNITRLTLSNCQNCCILPPLGQLRSLKDLTIYAVSMLETIGSEYGDSFSGVLFPSLKRLEFSKMPCWEVWHHSHESDVSFPVLKSLVIADCPRLHGSLPSHLLAVETIKIKHCNQLDSSLPSAPAIRKLCIIESNKIGLHELPISLEELKIQGREMTKFVFEAIAISLTSLQILDIRDCLSAISFPGDCLPFSLKSLSIRNSSNLNFPKQNHQHESLQSLRIDRSCDSLTTLPLEIFPNLVSLGIYNCENIECLSASKILPNLIDIDIRDCPKFVSFPREGLSAPNLTSLRVSRCLNLKSLPCHINNLSKVTPLLICPQQSRQFCNTVN 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08063 1100 PRINTS Disease resistance protein signature 258 272 - -
Vivi1g08063 1100 PRINTS Disease resistance protein signature 356 370 - -
Vivi1g08063 1100 PRINTS Disease resistance protein signature 632 648 - -
Vivi1g08063 1100 PRINTS Disease resistance protein signature 189 204 - -
Vivi1g08063 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 416 IPR027417 -
Vivi1g08063 1100 PANTHER DISEASE RESISTANCE PROTEIN RP 46 884 IPR044974 GO:0006952
Vivi1g08063 1100 SUPERFAMILY L domain-like 479 881 - -
Vivi1g08063 1100 Coils Coil 41 61 - -
Vivi1g08063 1100 Pfam Rx N-terminal domain 10 100 IPR041118 -
Vivi1g08063 1100 Gene3D - 401 489 IPR036388 -
Vivi1g08063 1100 FunFam Probable disease resistance protein At1g63360 402 490 - -
Vivi1g08063 1100 Gene3D - 15 126 - -
Vivi1g08063 1100 Gene3D Ribonuclease Inhibitor 910 1093 IPR032675 -
Vivi1g08063 1100 Gene3D Ribonuclease Inhibitor 525 909 IPR032675 -
Vivi1g08063 1100 Gene3D - 318 400 IPR042197 -
Vivi1g08063 1100 SMART LRR_typ_2 634 658 IPR003591 -
Vivi1g08063 1100 SMART LRR_typ_2 587 610 IPR003591 -
Vivi1g08063 1100 Pfam NB-ARC domain 169 384 IPR002182 GO:0043531
Vivi1g08063 1100 FunFam Probable disease resistance protein At1g61300 150 311 - -
Vivi1g08063 1100 SUPERFAMILY RNI-like 824 1085 - -
Vivi1g08063 1100 Gene3D - 150 313 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08063 Vivi-Chr1 225875160 225879835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08063 186 665 WRKY Transcription Factor Family AT5G45050 22.989 3.86e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08063 - - vvo:131644921 2191.39