Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08053 ATGGTGTACCAACTACAGTCCTCCGCTCTACCAACTGAGCTAAATTTGCTGAACAAGGTCGTATATGGATGCAGATTAACAACAAATAACTTATTTCATATTTTCAGCTACCGGGAAATGTTGTTGAACAGTCAACACTTCTTCAAGGAAAGTCTAACTGGATGGCTCCTGGAGATTATGGCGGCCGCTGCTGTTGGTGAAGCATTTCTCTCTGCCTTCGTTGAGGTTGTCCTTGACAGGCTTGCCTCTCCTCATGTTGTTGACTTGCTCCGTGGGAAGAAACTTGACCTCAATTTGATACAGAGGTTGAAGATCACTCTTTATGCTGTCGAAGCCGTGCTTAACGATGCTGAACAAAAGCAGATTCATGACTCTGCTGTTAACAAATGGCTTGATGATCTCAAAGATGCTCTCTATGTCGCTGATGACATTCTCGACCATATCTCTACCAAAGCTGCTCTTTCCAACAACAACAAGCAGGTCAGTACTGTTAACTACTTTTCTCGCTTTTTCAACTCCGAGGAAAGGGATTTGGTTTGTAAGCTGGAAGATATAGTTGCTAAGCTTGAACACATTCTCAATTTCAAAGATATTCTTGGCCTTCAACATATTGCAACTCATCACTCATCATGGAGATCTCCATCAACCTCTCTAGATCACCCTTCTAACATATTTGGTAGGGATCAAGACAAAGAGGCCATACTCAAATTACTCTCAGAGGCTGATAATGATGTTGATGATAACATTTCCGTGATTCCCATAGTTGGCATGGGTGGGGTGGGAAAAACTACCTTAGCTCAATCTGTGTTTAATACTATAAAGCACAAATTTGATGTTCCAGCGTGGGTTTGTGTTTCCGATGATTTCGATGAACTCAACGTAACCAAGGCCATCTTAGAGGCAGTTGCAGGGAGTTCTTGTAATATAAATAACAAAGAGTTACTTCATCTTGACTTGAAGGAAAGACTGTCTGGAAAAACGTTTTTGATTGTTTTGGATGATGTATGGACTGAAGATTATGACAGTTGGAACTCTCTTATAAGGCCTCTTCAATATGGAACTAAGGGAAGTAAAATTCTTGTTACTACCCGTATTGATAAAGTTGCTTCTATGGTCCAAACTTTTCAGGCTTACCCTCTTCAGCAATTGTCCGATGAAGATTGTTGGTCCGTGTTTGCAAACCATGCATGTCTTCCTCAAGAAGAATCCAATGAGTACATGGATCTCCAAAAGACTGGCAGAGAGATTGTTAGAAAATGTAAAGGATTGCCTTTAGCAGCACAATCACTTGGGGGCTTGTTGCGACGAAAACGGGACATCAAGGATTGGGATAATATACTAAATAGTAACATTTGGGAAAATGAGAGTAAGATCATTCCAGCACTAAGAATTAGTTATAATTATCTCCCTCCCTATTTGAAACGTTGCTTTGTTTATTGTTCCATATTTCCTAAGGATTATGAATTTGATAAAGACGATTTGATTTTGTTGTGGATGGCTGAAGATCTTTTACCGTCTTTGAAAAATGGGAAGACTTTAGAAGAAGTTGGTAATGAGTATTTTAATGATTTATCTTCAAGATCGTTCTTTCAACATTCGGGAAGTGGGAACCAATACCAGCGTTTTGTGATGCATGATCTGGTGCATGATTTAGCAACATTGATTGGTGGAGAATTCTATTTTGGAATAGATGAACTTGGGAAAGAATCGAAGATCGGTACCAAGACTCGTCATTTGTCATTTATTGAGTTTAGTGATCCTGTCTTGGAAAACTATGATGTTTTCAGCACAGCAAAAAACCTTAGGACGTTTTTGACAACCGATGTTAGACTTTCTCGAGGCAACCATGAAAAGGCACCATGCATCATTTTGGAGAATTTGAAGTGTTTAAGAGTTTTGTCATTTCCATCTTTTGCTAATCTTGACTCATTGCCTGATTCAATAGATGAACTAATCCATTTGCGTTATTTGGACCTCTCTTTCACAGCTATACAAACTTTGCCGGAGTCATTGTGTAATTTGTATAATCTACAAACGTTGAAGTTGTGCGGTTGCCAACAACTAACCATGCTTCCAAATGACATGCAAAATCTTGTAAATTTGCGCCATCTTGATATCAGTGGAACTAATCGGTTAGAAGAGATGCCTAGAGAAATGAGCAAATTAAATCATTTGCAATATCTGAGTCGCTTTGTTGTGGGCAACCATGAAAAGAATGGGATCAAGGAACTAGGAGCACTTTCAAATCTTCATGGATCACTTTTTATTAGTAAATTGGAGAATGTTACCAACAGCTTGGAAGCATCAAAGGCACATATCATGGATAAGAAGTACCTTGAGGGATTATGGTTTAAATGGTCTGAAGACGCAAAGGACCATTTTACAAATTCTCAAAGTGAGATGGATATACTTGGCAAGTTACAGCCTGCCAAGAACTTGAAAAGGCTAATTATACAAGGATATAGAGGCACAAGATTTCCAGATTGGGTTGGAGATCCTTCCTACCACAATTTGACCGACTTATCCTTGTATCGTTGTCTTAATTGTTGCATCCTTCCGCCAGTCGGACAATTACGCTTTCTCAAAGACTTGAGAATTTATAGATTGAGTATGCTGGAGACTATTGGATCTGAATATGGTGATTCCTTTTCAGGAATCCACTTTCCCTCCCTTGAACGCCTGGAGTTTCATGAGATGCCATGTTGGGAAGTGTGGCATCATTCTCATGAATCAGATGTTTCATTTCCTGCATTAAAGTCTCTTGTGATTGTTGATTGTCCCAGATTACACGGAGGTTTGCCATCTCATCTTCCTGTTGTGGAAACAATTAGGATTGAACATTGCAACCAACTTGACTCTTCACTCCCAAGGGCTCCTGCCATCCGCGAGTTATGCACAATTGGAAGCAATAAAATAGGCTTGCACGAACTACCCATCTCATTGGAAGAATTAAGAATTCAAGGAAGAGAAATGACAGAGTCTGTCTTTGAAGCCATTGCCATCAGCCTAACATCTCTTCAAATTTTAGATATCAGGGACTGTTTGTCTGCGATATCATTTCCGGGAGATTGTTTACCCTTTTCCTTAAAGAGTTTGTCCATCCGAAATTCTAGTAATCTGAATTTTCCAAAGCAAAACCACCAACATGAGTCACTTCAGTCTTTGAGGATAGATAGAAGTTGTGATTCTCTCACAACCCTCCCATTGGAGATCTTTCCAAACCTCATTTCTCTCAAAATCGATAATTGTGAAAACATAGAATGCCTTTCAGCTTCGAAAATTCTTCCAAATCTCATTGATATTGACATTAGAGACTGCCCTAAATTTGTATCATTCCCAAGAGAAGGATTGTCTGCACCCAACTTGACATCGTTGCGTGTCTCCCGGTGCCTTAATTTAAAGTCATTGCCTTGTCACATAAATAATCTTCTTCCAAAGTTAAAAGAGTTGAAAATATATGATTGCCCAGAGATGGAAACATTTCCCGAAGGTGGTATTCCACCTAGCTTGAGAAAACTTAAAGTTCGGAATTGCGAGAACTTATTGAGAAACCCATCTCTATCTTTCTTTGACATGCTTTCCCATCTTTCAATTGGAGATTTACATGATGGTGTTGAGTTCTTTCCTAAGAAGGGTTTTGCATTGCTGCCTCCCTCCCTTACCTATCTAGCTCTTTGCAATATGAATTGTTTGCACACGTTGGACTGCAGAGGGCTTCTCCACCTGACGTCTCTCCAACGCTTAACAATTGAGTCTTGCCCAAAGCTGGAGAATATGGTGGGAGAGAGGCTGCCTGCTTCTCTAATAAATCTTCATATAATTAGTTGTCCTCTGTTGGAAGAACGATGCCTCAAAAAACACTCTCAAATTTGGCCCAAAATTTCCCACATCGGAAGTATTATGGTTAACTACAAATGGATTTAG 3924 0.396 MVYQLQSSALPTELNLLNKVVYGCRLTTNNLFHIFSYREMLLNSQHFFKESLTGWLLEIMAAAAVGEAFLSAFVEVVLDRLASPHVVDLLRGKKLDLNLIQRLKITLYAVEAVLNDAEQKQIHDSAVNKWLDDLKDALYVADDILDHISTKAALSNNNKQVSTVNYFSRFFNSEERDLVCKLEDIVAKLEHILNFKDILGLQHIATHHSSWRSPSTSLDHPSNIFGRDQDKEAILKLLSEADNDVDDNISVIPIVGMGGVGKTTLAQSVFNTIKHKFDVPAWVCVSDDFDELNVTKAILEAVAGSSCNINNKELLHLDLKERLSGKTFLIVLDDVWTEDYDSWNSLIRPLQYGTKGSKILVTTRIDKVASMVQTFQAYPLQQLSDEDCWSVFANHACLPQEESNEYMDLQKTGREIVRKCKGLPLAAQSLGGLLRRKRDIKDWDNILNSNIWENESKIIPALRISYNYLPPYLKRCFVYCSIFPKDYEFDKDDLILLWMAEDLLPSLKNGKTLEEVGNEYFNDLSSRSFFQHSGSGNQYQRFVMHDLVHDLATLIGGEFYFGIDELGKESKIGTKTRHLSFIEFSDPVLENYDVFSTAKNLRTFLTTDVRLSRGNHEKAPCIILENLKCLRVLSFPSFANLDSLPDSIDELIHLRYLDLSFTAIQTLPESLCNLYNLQTLKLCGCQQLTMLPNDMQNLVNLRHLDISGTNRLEEMPREMSKLNHLQYLSRFVVGNHEKNGIKELGALSNLHGSLFISKLENVTNSLEASKAHIMDKKYLEGLWFKWSEDAKDHFTNSQSEMDILGKLQPAKNLKRLIIQGYRGTRFPDWVGDPSYHNLTDLSLYRCLNCCILPPVGQLRFLKDLRIYRLSMLETIGSEYGDSFSGIHFPSLERLEFHEMPCWEVWHHSHESDVSFPALKSLVIVDCPRLHGGLPSHLPVVETIRIEHCNQLDSSLPRAPAIRELCTIGSNKIGLHELPISLEELRIQGREMTESVFEAIAISLTSLQILDIRDCLSAISFPGDCLPFSLKSLSIRNSSNLNFPKQNHQHESLQSLRIDRSCDSLTTLPLEIFPNLISLKIDNCENIECLSASKILPNLIDIDIRDCPKFVSFPREGLSAPNLTSLRVSRCLNLKSLPCHINNLLPKLKELKIYDCPEMETFPEGGIPPSLRKLKVRNCENLLRNPSLSFFDMLSHLSIGDLHDGVEFFPKKGFALLPPSLTYLALCNMNCLHTLDCRGLLHLTSLQRLTIESCPKLENMVGERLPASLINLHIISCPLLEERCLKKHSQIWPKISHIGSIMVNYKWI 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08053 1307 Gene3D - 382 464 IPR042197 -
Vivi1g08053 1307 PANTHER DISEASE RESISTANCE PROTEIN RP 104 948 IPR044974 GO:0006952
Vivi1g08053 1307 Pfam NB-ARC domain 228 474 IPR002182 GO:0043531
Vivi1g08053 1307 Gene3D Ribonuclease Inhibitor 590 972 IPR032675 -
Vivi1g08053 1307 FunFam Probable disease resistance protein At1g63360 466 554 - -
Vivi1g08053 1307 Coils Coil 100 120 - -
Vivi1g08053 1307 Gene3D - 209 377 IPR027417 -
Vivi1g08053 1307 Gene3D - 465 553 IPR036388 -
Vivi1g08053 1307 Gene3D - 74 183 - -
Vivi1g08053 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 480 IPR027417 -
Vivi1g08053 1307 SUPERFAMILY L domain-like 959 1294 - -
Vivi1g08053 1307 Gene3D Ribonuclease Inhibitor 1166 1290 IPR032675 -
Vivi1g08053 1307 Gene3D Ribonuclease Inhibitor 1024 1165 IPR032675 -
Vivi1g08053 1307 Pfam Rx N-terminal domain 69 158 IPR041118 -
Vivi1g08053 1307 SUPERFAMILY L domain-like 543 953 - -
Vivi1g08053 1307 PRINTS Disease resistance protein signature 420 434 - -
Vivi1g08053 1307 PRINTS Disease resistance protein signature 251 266 - -
Vivi1g08053 1307 PRINTS Disease resistance protein signature 696 712 - -
Vivi1g08053 1307 PRINTS Disease resistance protein signature 322 336 - -
Vivi1g08053 1307 SMART LRR_typ_2 698 722 IPR003591 -
Vivi1g08053 1307 SMART LRR_typ_2 651 674 IPR003591 -
Vivi1g08053 1307 FunFam Probable disease resistance protein At1g61300 209 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08053 Vivi-Chr1 225772668 225778100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08053 248 729 WRKY Transcription Factor Family AT5G45050 22.727 1.74e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08053 - - vvo:131644921 1944.86