Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08052 ATGTTGTTGAACAGTCAACACTTCTTCAAGGAAAGTCTAACTGGATGGCTCCTGGAGATTATGGCGGCCGCTGCTGTTGGTGAAGCATTTCTCTCTGCCTTCGTTGAGGTTGTCCTTGACAGGCTTGCCTCTCCTCATGTTGTTGACTTGCTCCGTGGGAAGAAACTTGACCTCAATTTGATACAGAGGTTGAAGATCACTCTTTATGCTGTCGAAGCCGTGCTTAACGATGCTGAACAAAAGCAGATTCATGACTCTGCTGTTAACAAATGGCTTGATGATCTCAAAGATGCTCTCTATGTCGCTGATGACATTCTCGACCATATCTCTACCAAAGCTGCTCTTTCCAACAACAACAAGCAGGTCAGTACTGTTAACTACTTTTCTCGCTTTTTCAACTCCGAGGAAAGGGATTTGGTTTGTAAGCTGGAAGATATAGTTGCTAAGCTTGAACACATTCTCAATTTCAAAGATATTCTTGGCCTTCAACATATTGCAACTCATCACTCATCATGGAGATCTCCATCAACCTCTCTAGATCACCCTTCTAACATATTTGGTAGGGATCAAGACAAAGAGGCCATACTCAAATTACTCTCAGAGGCTGATAATGATGTTGATGATAACATTTCCGTGATTCCCATAGTTGGCATGGGTGGGGTGGGAAAAACTACCTTAGCTCAATCTGTGTTTAATACTATAAAGCACAAATTTGATGTTCCAGCGTGGGTTTGTGTTTCCGATGATTTCGATGAACTCAACGTAACCAAGGCCATCTTAGAGGCAGTTGCAGGGAGTTCTTGTAATATAAATAACAAAGAGTTACTTCATCTTGACTTGAAGGAAAGACTGTCTGGAAAAACGTTTTTGATTGTTTTGGATGATGTATGGACTGAAGATTATGACAGTTGGAACTCTCTTATAAGGCCTCTTCAATATGGAACTAAGGGAAGTAAAATTCTTGTTACTACCCGTATTGATAAAGTTGCTTCTATGGTCCAAACTTTTCAGGCTTACCCTCTTCAGCAATTGTCCGATGAAGATTGTTGGTCCGTGTTTGCAAACCATGCATGTCTTCCTCAAGAAGAATCCAATGAGTACATGGATCTCCAAAAGACTGGCAGAGAGATTGTTAGAAAATGTAAAGGATTGCCTTTAGCAGCACAATCACTTGGGGGCTTGTTGCGACGAAAACGGGACATCAAGGATTGGGATAATATACTAAATAGTAACATTTGGGAAAATGAGAGTAAGATCATTCCAGCACTAAGAATTAGTTATAATTATCTCCCTCCCTATTTGAAACGTTGCTTTGTTTATTGTTCCATATTTCCTAAGGATTATGAATTTGATAAAGACGATTTGATTTTGTTGTGGATGGCTGAAGATCTTTTACCGTCTTTGAAAAATGGGAAGACTTTAGAAGAAGTTGGTAATGAGTATTTTAATGATTTATCTTCAAGATCGTTCTTTCAACATTCGGGAAGTGGGAACCAATACCAGCGTTTTGTGATGCATGATCTGGTGCATGATTTAGCAACATTGATTGGTGGAGAATTCTATTTTGGAATAGATGAACTTGGGAAAGAATCGAAGATCGGTACCAAGACTCGTCATTTGTCATTTATTGAGTTTAGTGATCCTGTCTTGGAAAACTATGATGTTTTCAGCACAGCAAAAAACCTTAGGACGTTTTTGACAACCGATGTTAGACTTTCTCGAGGCAACCATGAAAAGGCACCATGCATCATTTTGGAGAATTTGAAGTGTTTAAGAGTTTTGTCATTTCCATCTTTTGCTAATCTTGACTCATTGCCTGATTCAATAGATGAACTAATCCATTTGCGTTATTTGGACCTCTCTTTCACAGCTATACAAACTTTGCCGGAGTCATTGTGTAATTTGTATAATCTACAAACGTTGAAGTTGTGCGGTTGCCAACAACTAACCATGCTTCCAAATGACATGCAAAATCTTGTAAATTTGCGCCATCTTGATATCAGTGGAACTAATCGGTTAGAAGAGATGCCTAGAGAAATGAGCAAATTAAATCATTTGCAATATCTGAGTCGCTTTGTTGTGGGCAACCATGAAAAGAATGGGATCAAGGAACTAGGAGCACTTTCAAATCTTCATGGATCACTTTTTATTAGTAAATTGGAGAATGTTACCAACAGCTTGGAAGCATCAAAGGCACATATCATGGATAAGAAGTACCTTGAGGGATTATGGTTTAAATGGTCTGAAGACGCAAAGGACCATTTTACAAATTCTCAAAGTGAGATGGATATACTTGGCAAGTTACAGCCTGCCAAGAACTTGAAAAGGCTAATTATACAAGGATATAGAGGCACAAGATTTCCAGATTGGGTTGGAGATCCTTCCTACCACAATTTGACCGACTTATCCTTGTATCGTTGTCTTAATTGTTGCATCCTTCCGCCAGTCGGACAATTACGCTTTCTCAAAGACTTGAGAATTTATAGATTGAGTATGCTGGAGACTATTGGATCTGAATATGGTGATTCCTTTTCAGGAATCCACTTTCCCTCCCTTGAACGCCTGGAGTTTCATGAGATGCCATGTTGGGAAGTGTGGCATCATTCTCATGAATCAGATGTTTCATTTCCTGCATTAAAGTCTCTTGTGATTGTTGATTGTCCCAGATTACACGGAGGTTTGCCATCTCATCTTCCTGTTGTGGAAACAATTAGGATTGAACATTGCAACCAACTTGACTCTTCACTCCCAAGGGCTCCTGCCATCCGCGAGTTATGCACAATTGGAAGCAATAAAATAGGCTTGCACGAACTACCCATCTCATTGGAAGAATTAAGAATTCAAGGAAGAGAAATGACAGAGTCTGTCTTTGAAGCCATTGCCATCAGCCTAACATCTCTTCAAATTTTAGATATCAGGGACTGTTTGTCTGCGATATCATTTCCGGGAGATTGTTTACCCTTTTCCTTAAAGAGTTTGTCCATCCGAAATTCTAGTAATCTGAATTTTCCAAAGCAAAACCACCAACATGAGTCACTTCAGTCTTTGAGGATAGATAGAAGTTGTGATTCTCTCACAACCCTCCCATTGGAGATCTTTCCAAACCTCATTTCTCTCAAAATCGATAATTGTGAAAACATAGAATGCCTTTCAGCTTCGAAAATTCTTCCAAATCTCATTGATATTGACATTAGAGACTGCCCTAAATTTGTATCATTCCCAAGAGAAGGATTGTCTGCACCCAACTTGACATCGTTGCGTGTCTCCCGGTGCCTTAATTTAAAGTCATTGCCTTGTCACATAAATAATCTTCTTCCAAAGTTAAAAGAGTTGAAAATATATGATTGCCCAGAGATGGAAACATTTCCCGAAGGTGGTATTCCACCTAGCTTGAGAAAACTTAAAGTTCGGAATTGCGAGAACTTATTGAGAAACCCATCTCTATCTTTCTTTGACATGCTTTCCCATCTTTCAATTGGAGATTTACATGATGGTGTTGAGTTCTTTCCTAAGAAGGGTTTTGCATTGCTGCCTCCCTCCCTTACCTATCTAGCTCTTTGCAATATGAATTGTTTGCACACGTTGGACTGCAGAGGGCTTCTCCACCTGACGTCTCTCCAACGCTTAACAATTGAGTCTTGCCCAAAGCTGGAGAATATGGTGGGAGAGAGGCTGCCTGCTTCTCTAATAAATCTTCATATAATTAGTTGTCCTCTGTTGGAAGAACGATGCCTCAAAAAACACTCTCAAATTTGGCCCAAAATTTCCCACATCGGAAGTATTATGGTTAACTACAAATGGATTTAG 3807 0.3961 MLLNSQHFFKESLTGWLLEIMAAAAVGEAFLSAFVEVVLDRLASPHVVDLLRGKKLDLNLIQRLKITLYAVEAVLNDAEQKQIHDSAVNKWLDDLKDALYVADDILDHISTKAALSNNNKQVSTVNYFSRFFNSEERDLVCKLEDIVAKLEHILNFKDILGLQHIATHHSSWRSPSTSLDHPSNIFGRDQDKEAILKLLSEADNDVDDNISVIPIVGMGGVGKTTLAQSVFNTIKHKFDVPAWVCVSDDFDELNVTKAILEAVAGSSCNINNKELLHLDLKERLSGKTFLIVLDDVWTEDYDSWNSLIRPLQYGTKGSKILVTTRIDKVASMVQTFQAYPLQQLSDEDCWSVFANHACLPQEESNEYMDLQKTGREIVRKCKGLPLAAQSLGGLLRRKRDIKDWDNILNSNIWENESKIIPALRISYNYLPPYLKRCFVYCSIFPKDYEFDKDDLILLWMAEDLLPSLKNGKTLEEVGNEYFNDLSSRSFFQHSGSGNQYQRFVMHDLVHDLATLIGGEFYFGIDELGKESKIGTKTRHLSFIEFSDPVLENYDVFSTAKNLRTFLTTDVRLSRGNHEKAPCIILENLKCLRVLSFPSFANLDSLPDSIDELIHLRYLDLSFTAIQTLPESLCNLYNLQTLKLCGCQQLTMLPNDMQNLVNLRHLDISGTNRLEEMPREMSKLNHLQYLSRFVVGNHEKNGIKELGALSNLHGSLFISKLENVTNSLEASKAHIMDKKYLEGLWFKWSEDAKDHFTNSQSEMDILGKLQPAKNLKRLIIQGYRGTRFPDWVGDPSYHNLTDLSLYRCLNCCILPPVGQLRFLKDLRIYRLSMLETIGSEYGDSFSGIHFPSLERLEFHEMPCWEVWHHSHESDVSFPALKSLVIVDCPRLHGGLPSHLPVVETIRIEHCNQLDSSLPRAPAIRELCTIGSNKIGLHELPISLEELRIQGREMTESVFEAIAISLTSLQILDIRDCLSAISFPGDCLPFSLKSLSIRNSSNLNFPKQNHQHESLQSLRIDRSCDSLTTLPLEIFPNLISLKIDNCENIECLSASKILPNLIDIDIRDCPKFVSFPREGLSAPNLTSLRVSRCLNLKSLPCHINNLLPKLKELKIYDCPEMETFPEGGIPPSLRKLKVRNCENLLRNPSLSFFDMLSHLSIGDLHDGVEFFPKKGFALLPPSLTYLALCNMNCLHTLDCRGLLHLTSLQRLTIESCPKLENMVGERLPASLINLHIISCPLLEERCLKKHSQIWPKISHIGSIMVNYKWI 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08052 1268 SUPERFAMILY L domain-like 504 914 - -
Vivi1g08052 1268 PRINTS Disease resistance protein signature 283 297 - -
Vivi1g08052 1268 PRINTS Disease resistance protein signature 381 395 - -
Vivi1g08052 1268 PRINTS Disease resistance protein signature 657 673 - -
Vivi1g08052 1268 PRINTS Disease resistance protein signature 212 227 - -
Vivi1g08052 1268 FunFam Probable disease resistance protein At1g61300 170 336 - -
Vivi1g08052 1268 Coils Coil 61 81 - -
Vivi1g08052 1268 FunFam Probable disease resistance protein At1g63360 427 515 - -
Vivi1g08052 1268 Gene3D - 35 141 - -
Vivi1g08052 1268 Gene3D - 170 338 IPR027417 -
Vivi1g08052 1268 SMART LRR_typ_2 612 635 IPR003591 -
Vivi1g08052 1268 SMART LRR_typ_2 659 683 IPR003591 -
Vivi1g08052 1268 SUPERFAMILY L domain-like 920 1255 - -
Vivi1g08052 1268 Gene3D - 426 514 IPR036388 -
Vivi1g08052 1268 Pfam Rx N-terminal domain 30 119 IPR041118 -
Vivi1g08052 1268 Gene3D - 343 425 IPR042197 -
Vivi1g08052 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 441 IPR027417 -
Vivi1g08052 1268 Gene3D Ribonuclease Inhibitor 985 1127 IPR032675 -
Vivi1g08052 1268 Gene3D Ribonuclease Inhibitor 1128 1251 IPR032675 -
Vivi1g08052 1268 Gene3D Ribonuclease Inhibitor 551 933 IPR032675 -
Vivi1g08052 1268 Pfam NB-ARC domain 189 435 IPR002182 GO:0043531
Vivi1g08052 1268 PANTHER DISEASE RESISTANCE PROTEIN RP 65 909 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08052 Vivi-Chr1 225772668 225778100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08052 209 690 WRKY Transcription Factor Family AT5G45050 22.727 1.55e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08052 - - vvo:131644921 1944.86