Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08037 ATGGCTTCTTCAAATAGACACTGGCCAAGCATGTTCAAGTCTAAGCCCTGCAACACTCATCACCAATGGCAGCATGACATCAACTCTTCTCTCATCTCATCTTCTGCTTGTCACAGAACTCCTTACTCATCAGGTTGTGAAGAGAGGAGTCCTGAACCGAAGCCGAGGTGGAATCCGAAACCGGAGCAGATTCGGATACTGGAAGCTATATTCAACTCAGGAATGGTGAATCCGCCGAGAGAGGAGATAAGGAAGATTAGAGCACAGTTGCAAGAGTATGGTCAAGTTGGTGATGCTAATGTGTTTTACTGGTTTCAGAATCGGAAATCAAGAAGCAAGCATAAGCTTCGTCATCTTCAGAACCAAAACAACTCGAGGAACCAGCAGAATCAGAATCAGAATCATGAACAACCACAACCACAGCAGAACAATCATGTTTCTTCGGTTTCTCAGACGACGGTTGCACCGTCGTCTTCGTCTTCTTCGTCGGAGAAGTCTCCGCCGAAGGAGATAATACCTTCCAAGGTGTTTTCTCTAGGTTTCCCTAACTTCAACGACGTTGTGCCGAATTCTCCGTCTGCTTCTTCTGTGAACCAAACCTATTTTCAGACACAAAATGAAGGCAATCTTCTTCCACCACCACAGCCAAGAGCAACTGCACCACCACCTACTGAGGCTTTCTTCTTTCCAGTGCAAAATCATGGACAAGGTGGTGTTGTTCAACCTAATAATGCTACTTCACAAGGGTTTTGCTTCTCTGAACTCTCAAATGTTGTTCATGCTCAACAATCACATGCTCAACAGCATCAACAACATCAAAACACTGGTCATTGCACTACTAGTTTTCTGCTTAGTGAGATCATGAACAACCATGGTGCTAATTCCTCAAAGAAAGATCAAAATCAAAATCAAGATCAAGATCAGGATAAGTCTGTCAAAACAGTGCACCAAATCCCTCATTTTAACTTCTGTTTCACACCTACACCCACAACTACTACTACTACTGTTGTACCTCCTACTACCTCCTCCACCATCACTGTTCCATCCCCTATCATTTCTCAACTACAAGGCATTGGAGAAACAGGTGTTCCTGCAAGATTAATGGTGTTCATCAATGATGTGGCATTTGAGGTAGCATCTGGACCTTTCAATGTTCGTGAAGCATTTGGTGATGATTCTGTGCTCATTCATTCAACTGGACAACCAGTTTTGACAAACCAATGGGGTGTAACTCTCCATCCACTCCAGTATGGTGCATGTTATTATCTGATATAG 1275 0.4353 MASSNRHWPSMFKSKPCNTHHQWQHDINSSLISSSACHRTPYSSGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNQNNSRNQQNQNQNHEQPQPQQNNHVSSVSQTTVAPSSSSSSSEKSPPKEIIPSKVFSLGFPNFNDVVPNSPSASSVNQTYFQTQNEGNLLPPPQPRATAPPPTEAFFFPVQNHGQGGVVQPNNATSQGFCFSELSNVVHAQQSHAQQHQQHQNTGHCTTSFLLSEIMNNHGANSSKKDQNQNQDQDQDKSVKTVHQIPHFNFCFTPTPTTTTTTVVPPTTSSTITVPSPIISQLQGIGETGVPARLMVFINDVAFEVASGPFNVREAFGDDSVLIHSTGQPVLTNQWGVTLHPLQYGACYYLI 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08037 424 SMART HOX_1 52 119 IPR001356 GO:0003677
Vivi1g08037 424 SUPERFAMILY Homeodomain-like 50 118 IPR009057 -
Vivi1g08037 424 FunFam WUSCHEL-related homeobox 11 54 121 - -
Vivi1g08037 424 Coils Coil 116 136 - -
Vivi1g08037 424 CDD homeodomain 53 115 IPR001356 GO:0003677
Vivi1g08037 424 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 424 IPR044557 GO:0003700|GO:0050793
Vivi1g08037 424 Gene3D - 54 120 - -
Vivi1g08037 424 Pfam Homeodomain 54 114 IPR001356 GO:0003677
Vivi1g08037 424 MobiDBLite consensus disorder prediction 112 170 - -
Vivi1g08037 424 ProSiteProfiles 'Homeobox' domain profile. 50 115 IPR001356 GO:0003677
Vivi1g08037 424 MobiDBLite consensus disorder prediction 291 312 - -
Vivi1g08037 424 MobiDBLite consensus disorder prediction 40 61 - -
Vivi1g08037 424 MobiDBLite consensus disorder prediction 121 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08037 Vivi-Chr1 225408240 225411129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08037 1 121 Wox Gene Family AT2G33880 85.246 7.22e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vivi1g08037 Homeodomain 6.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08037 - - aprc:113852083 482.641