Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08029 ATGGTTCTTCAAAACGATATTGATTTGTTAAACCCTCCTGCTGAGCTTGAGAAGAGAAAGCACAAACTCAAGCGTCTTGTTCAATCACCAAACTCTTTCTTTATGGATGTTAAATGCCAGGGTTGTTTCAACATAACCACTGTTTTTAGCCACTCTCAGACTGTTGTGGTGTGCGGTAACTGCCAGACTGTTTTGTGCCAGCCAACAGGTGGTCGTGCAAGGCTAACAGAAGGATGCTCCTTTAGGAAGAAGGGAGATTAA 261 0.433 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08029 86 FunFam 40S ribosomal protein S27 1 86 - -
Vivi1g08029 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vivi1g08029 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vivi1g08029 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vivi1g08029 86 Gene3D - 5 85 IPR023407 -
Vivi1g08029 86 PANTHER 40S RIBOSOMAL PROTEIN S27 1 86 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vivi1g08029 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08029 Vivi-Chr1 224881516 224882764 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08029 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 95.349 8.03e-60 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08029 K02978 - minc:123230388 177.178