Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07993 ATGTCTCGCCCAATTGAGTCATTGAAAGAGATCAATGATTCAAAAGATTTGTGGAAGATCGCTGTTAGATGCAAACATCTATGGACTGTCACAAGTTCTTCAAACAAAGAACACATGGAGATGGTTTTGGTTGATTCTAAGCGTGATATGATTCAGGCTGTTGTCCCTGCTTATTTGCTTTCGAAATTCAAATCTGAAATTGAAACAGGAAACTCTTATATCATGCAGAATTTTAAAGTTGGGAAGAATGATTTTGCTTTTAAGTCGACAAATCATACATACAAATTGGTTTTTTGTGGGTCAACTTCTGTTAAGAAGGCAGAATTTCCTGACATCCCTCATAACTACCTTAATATTATTGGTTTGAATTCCATAGTTGAAGGAAGGTTTCAATCAAATGTTTTGGTTGATTTGATTGGAGGAATCACTGATATCACTCAAACCCAAGTTAACGGTGACAACAACAAGAACAGAATAGTTTTTTCAATTGTAGATGCCAGCAAAACAGTTGTACAATGTACTCTTTGGGGGAAACTTGCAGTTCAGCTATATGAGTATTATATGAATAATAAGCAAGCCTCTGCTATTGTCATTGTGCTAATCAATGCAAGGGTTAAAGAGGCTCAAGGAGGATTTCCAGTTAGTGTTTCCAACACATGGAACGGAACGAAACTGTTGATTAATGACCTTGCTATTGAGGAAGTCAAGAGTCTAAAAGAAAGACTTGGTGTTGATTTGCCTTTGTTATCATCTTCAAGTGTACAAGTTGAGACAACGCAAAACTCATTTTATTATGACTATGACAAATTTGTTTGGAAGGCTGAAATAATGAGTCTCTCTGAAATAACAAATCTGCAACATGAAACAACCTGTGTTACCGTTGCTACCCTCGATAAGTTTGATGCTGGGCAGATGGGATGGTACTATGATGGATGTGTGGAATGCACAAGGAGTGTGACTGCCAAGGATGGAAAGCTGAAGTGCTTTAAGGATCATATTAGCCCAGAACCTGTGCCACGGTATAAGCTTGATATAACAGCTGTTGACGGCAGTTCGAAGGCAAAGTTCGTCTTTTGGGACACAGACTGCGTGAAGTTAATTGGGAAGTCTGCTCTTCAAATGAAGATAGATTTAACACAGTCTGTTGATTACGATCCACTTGAGTTCCCTTACGAACTTGACTCCATATTGGAAAAAGAATTGGCAATTAGAGCTGTTTACCAGCCTAAAAATGGGAGACTTTCTGTCATTGGCTTCAAGACTGATGAAGATGTGCGTAATAAAATTAAGGAGAGTTTCAAATTTGAAGAGGAACCTGTATCTGCATCTGCAGAAAATGACCTGACCATTGGAAATTCAGGACTCACTCCATGTAACAGACTTATGAATGATGCAGTAGAAGATAATGATAGTGTATAA 1419 0.3791 MSRPIESLKEINDSKDLWKIAVRCKHLWTVTSSSNKEHMEMVLVDSKRDMIQAVVPAYLLSKFKSEIETGNSYIMQNFKVGKNDFAFKSTNHTYKLVFCGSTSVKKAEFPDIPHNYLNIIGLNSIVEGRFQSNVLVDLIGGITDITQTQVNGDNNKNRIVFSIVDASKTVVQCTLWGKLAVQLYEYYMNNKQASAIVIVLINARVKEAQGGFPVSVSNTWNGTKLLINDLAIEEVKSLKERLGVDLPLLSSSSVQVETTQNSFYYDYDKFVWKAEIMSLSEITNLQHETTCVTVATLDKFDAGQMGWYYDGCVECTRSVTAKDGKLKCFKDHISPEPVPRYKLDITAVDGSSKAKFVFWDTDCVKLIGKSALQMKIDLTQSVDYDPLEFPYELDSILEKELAIRAVYQPKNGRLSVIGFKTDEDVRNKIKESFKFEEEPVSASAENDLTIGNSGLTPCNRLMNDAVEDNDSV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07993 472 Gene3D - 2 107 IPR012340 -
Vivi1g07993 472 SUPERFAMILY Nucleic acid-binding proteins 118 249 IPR012340 -
Vivi1g07993 472 SUPERFAMILY Nucleic acid-binding proteins 5 108 IPR012340 -
Vivi1g07993 472 Gene3D - 110 244 IPR012340 -
Vivi1g07993 472 Gene3D - 270 429 IPR012340 -
Vivi1g07993 472 CDD RPA1_DBD_B_like 137 242 - -
Vivi1g07993 472 Pfam Domain of unknown function DUF223 40 135 IPR003871 -
Vivi1g07993 472 PANTHER OS03G0429900 PROTEIN 11 439 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi1g07993 472 SUPERFAMILY Nucleic acid-binding proteins 275 406 IPR012340 -
Vivi1g07993 472 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07993 Vivi-Chr1 223179373 223181687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07993 1 371 Core DNA Replication Machinery Family AT5G08020 22.251 6.12e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07993 - - vvo:131658312 782.711