Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi1g07947 | ATGAGTATCTTCGCATGTGAAGAACCACTTGCTGTTGGTTCAGCATACGAGACTTCTGCGTGGAATGCTACTTGGCCACACCAAATTTATGGTAATGAGACTACAACAATGTTGCCTAACCAATCCAAATTCACCCATGCGTTGAGGTGTGAAGTGTGTAAAATTGATGTCAATAGCAAAGATTCATATGAAAAGCACATAGCTGGAAAGAAACACCAGAAGAATTTACAAAGTGGCGCAAGCATCCAAGGACAAGCGTTAATCGGTCCTGTAGTCCAGCAATCAGCGATTAAGAAACAGGTGGAACAGTCAAAGGTTTGCACAACTTGCAATGTTTTGTGCACAAGTCACGACACATATATCAAACATATTGCTGGGAAAAAGCACGCAGCTCAGGTTGGCTTGATGTCTAATGGTGGCATTGGTCCATCTATTGCCAAATTCAAGCGTATTGGAGTTCCTCCGTTTCAAAAAGCTGCTAAGAGACTCAAGGTTGCTCAATCTGCATGGTGTGAAACTTGTAAGATTAATTGTAACAGCAGGGATATGTACATTACACATTTAGCCGGAAAAAAACACTTGAAGAACTTGGAAAAACTGTCGAATCCGAAAATCGAAGTTGGCACAAGCGCCGCTGCCACTGCGACAATTACTTTAATCGGACCACAGGAAAAGCCAGGTACCGATAATCCAAAAGCAAGGAAGGCATCGGAACTTGCTATCGAGTCAAAGAAACGTAAAATTGTAGAAGGAGGAACTGCGGTTAATAATGTTAAAACATGTACTTTATGCAATGTGGTGTGTAATAGCGAGACGGTTTTCAATTTGCACCTTATTGGCCAGAAACATGCTGCTATGGTGAAGAAAGCAGGATCAAGCACTGGTTGA | 888 | 0.42 | MSIFACEEPLAVGSAYETSAWNATWPHQIYGNETTTMLPNQSKFTHALRCEVCKIDVNSKDSYEKHIAGKKHQKNLQSGASIQGQALIGPVVQQSAIKKQVEQSKVCTTCNVLCTSHDTYIKHIAGKKHAAQVGLMSNGGIGPSIAKFKRIGVPPFQKAAKRLKVAQSAWCETCKINCNSRDMYITHLAGKKHLKNLEKLSNPKIEVGTSAAATATITLIGPQEKPGTDNPKARKASELAIESKKRKIVEGGTAVNNVKTCTLCNVVCNSETVFNLHLIGQKHAAMVKKAGSSTG | 295 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi1g07947 | 295 | SUPERFAMILY | beta-beta-alpha zinc fingers | 100 | 133 | IPR036236 | - | |
| Vivi1g07947 | 295 | SMART | c2h2final6 | 48 | 72 | IPR013087 | - | |
| Vivi1g07947 | 295 | SMART | c2h2final6 | 169 | 193 | IPR013087 | - | |
| Vivi1g07947 | 295 | SMART | c2h2final6 | 259 | 283 | IPR013087 | - | |
| Vivi1g07947 | 295 | SMART | c2h2final6 | 105 | 129 | IPR013087 | - | |
| Vivi1g07947 | 295 | Gene3D | Classic Zinc Finger | 240 | 290 | - | - | |
| Vivi1g07947 | 295 | Gene3D | Classic Zinc Finger | 92 | 135 | - | - | |
| Vivi1g07947 | 295 | Gene3D | Classic Zinc Finger | 33 | 78 | - | - | |
| Vivi1g07947 | 295 | Gene3D | Classic Zinc Finger | 156 | 200 | - | - | |
| Vivi1g07947 | 295 | SUPERFAMILY | beta-beta-alpha zinc fingers | 254 | 289 | IPR036236 | - | |
| Vivi1g07947 | 295 | SUPERFAMILY | beta-beta-alpha zinc fingers | 166 | 200 | IPR036236 | - | |
| Vivi1g07947 | 295 | PANTHER | ZINC FINGER RNA-BINDING PROTEIN | 96 | 210 | - | - | |
| Vivi1g07947 | 295 | Pfam | Zinc-finger of C2H2 type | 170 | 193 | - | - | |
| Vivi1g07947 | 295 | Pfam | Zinc-finger of C2H2 type | 260 | 283 | - | - | |
| Vivi1g07947 | 295 | Pfam | Zinc-finger of C2H2 type | 49 | 72 | - | - | |
| Vivi1g07947 | 295 | Pfam | Zinc-finger of C2H2 type | 106 | 129 | - | - | |
| Vivi1g07947 | 295 | SMART | ZnF_U1_5 | 166 | 200 | IPR003604 | GO:0003676|GO:0008270 | |
| Vivi1g07947 | 295 | SMART | ZnF_U1_5 | 45 | 79 | IPR003604 | GO:0003676|GO:0008270 | |
| Vivi1g07947 | 295 | SMART | ZnF_U1_5 | 102 | 136 | IPR003604 | GO:0003676|GO:0008270 | |
| Vivi1g07947 | 295 | SMART | ZnF_U1_5 | 256 | 290 | IPR003604 | GO:0003676|GO:0008270 | |
| Vivi1g07947 | 295 | SUPERFAMILY | beta-beta-alpha zinc fingers | 26 | 77 | IPR036236 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi1g07947 | 102 | 290 | C2H2 Transcription Factor Family | AT5G61190 | 28.125 | 2.12e-17 | 80.9 |
Transcription factors information