Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07927 ATGGATTCTGGCTATGATATTTCGAGGGTACTGTTCAATACCACTTCTTATAGATTTGATGCATTCAATGGGATTACAAGAGGTGGGTTTGTATCAACAAATTCTTTGGTTCTAGATTCTGAGAAAGAAGAACTAGTGAAGTCGCCTCGAAATAAAATGAATGGAGAGAAAAAGATGTGTGATGGTACCAAAACGTTGATGGCTTTGAAGAGTCATAGGGAAGCTGAGAGGAGAAGAAGGAGCAGAATCAATGGTCATCATGCAAAACTTCGAGGACTTGTCTCATGTCCTTTAAAGATGGACAAAGCAACCTTACTAGCAGAGGTTGTTAGGCAAGTGAAGGAACTGAAAAAGAACGCAAATGAAGAAAGCAAAGGTTATCTAATCCCCAAAGATAGTAATGAAGTGAAAGTTGAAATTGAACAATGTGAAAGTGGTGGAATAGATGGATCAATTCTTTACAAAGCATCAATCTGCTGTGAGTATGGACCAGAGCTTCTATCTGATCTAAAGAAAACTCTTGATACACTTCAACTGGATTTGGTAAGGGCGGAATTTAATGTTCATCATGCACTTACTTCTGTTTTGGATAAGGCTTCTGCTTCAATGGATTATGAATTAAAACTACCACCACGTCCTTGCATGCAGCTTCAGCACACTTCTGGTTTGGTAGATACTTTTTCGGATTTGTCATTTAACTTTTCATGA 708 0.3814 MDSGYDISRVLFNTTSYRFDAFNGITRGGFVSTNSLVLDSEKEELVKSPRNKMNGEKKMCDGTKTLMALKSHREAERRRRSRINGHHAKLRGLVSCPLKMDKATLLAEVVRQVKELKKNANEESKGYLIPKDSNEVKVEIEQCESGGIDGSILYKASICCEYGPELLSDLKKTLDTLQLDLVRAEFNVHHALTSVLDKASASMDYELKLPPRPCMQLQHTSGLVDTFSDLSFNFS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07927 235 Pfam Helix-loop-helix DNA-binding domain 71 116 IPR011598 GO:0046983
Vivi1g07927 235 SMART finulus 73 122 IPR011598 GO:0046983
Vivi1g07927 235 PANTHER TRANSCRIPTION FACTOR BHLH30 31 187 IPR045847 GO:0003700|GO:0006355
Vivi1g07927 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 122 IPR036638 GO:0046983
Vivi1g07927 235 Gene3D - 64 126 IPR036638 GO:0046983
Vivi1g07927 235 Coils Coil 106 126 - -
Vivi1g07927 235 Coils Coil 167 187 - -
Vivi1g07927 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07927 Vivi-Chr1 219669933 219671196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07927 70 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 45.833 5.66e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g07927 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07927 - - vvo:131595173 445.277