Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07917 ATGGAGGGACAATCTTCTAATGAAGGTTCCAGTACCGGCAATGTCTCAGCAGACTCTTCTGATTCAACTGTTCAGCTCAATATTAAAACTTTAGATTCCCGCATCTACAGTTTTCAAGTTGAAAAAAATATACCCGTTTCCTTGTTCAAAGAAAAAATTGCTAGTGAAATAGGTGTACCGGTTAATCAGCAACGACTCATATTTAGAGGAAAAGTCCTCAAGGATGAACATGTCCTTTCTGAGTATCATGTTGAGAATGGGCATACGTTGCATTTAGTTGAAAGACAGCCAAATCCGCCTCAGACTTCTGGTGCGGGTTCCGTTGAGACAACTAGTACAAACAGTAACCGAGGAAACGGTGCTGGATCAGGAGCTCCTCGTAACCGTGTTGGCCAAATTTCACACAGCGTGGTTCTTGGGACTTTTAATGTGGGGGAACAAGTTGAAAGCACTGCTCAAGACCTTACTAGGGTTTTTGCTTTGGTTGGTATTCAAATTTTTTCTTTCAAATTCTATATGCGCTTCGGTATTCTGTTGACTACTGCTACAACAAACGTGAAGATAATGAAGTTATCTATCCCTTAA 585 0.4085 MEGQSSNEGSSTGNVSADSSDSTVQLNIKTLDSRIYSFQVEKNIPVSLFKEKIASEIGVPVNQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNPPQTSGAGSVETTSTNSNRGNGAGSGAPRNRVGQISHSVVLGTFNVGEQVESTAQDLTRVFALVGIQIFSFKFYMRFGILLTTATTNVKIMKLSIP 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07917 194 ProSitePatterns Ubiquitin domain signature. 50 75 IPR019954 -
Vivi1g07917 194 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Vivi1g07917 194 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1g07917 194 FunFam Large proline-rich protein BAG6 16 109 - -
Vivi1g07917 194 MobiDBLite consensus disorder prediction 90 128 - -
Vivi1g07917 194 SMART ubq_7 24 95 IPR000626 GO:0005515
Vivi1g07917 194 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Vivi1g07917 194 SUPERFAMILY Ubiquitin-like 19 100 IPR029071 -
Vivi1g07917 194 Gene3D - 12 108 - -
Vivi1g07917 194 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 158 - -
Vivi1g07917 194 PRINTS Ubiquitin signature 76 97 IPR019956 -
Vivi1g07917 194 PRINTS Ubiquitin signature 55 75 IPR019956 -
Vivi1g07917 194 PRINTS Ubiquitin signature 34 54 IPR019956 -
Vivi1g07917 194 MobiDBLite consensus disorder prediction 95 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07917 Vivi-Chr1 219133879 219136570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07917 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.278 7.34e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07917 - - vvo:131595097 365.155