Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07909 ATGGATTCTGGCTATGATATTTCAAGGATACTGTTCAATACCACTTCAAGAGGTGGATTTGTATCAAGAAACTCACTGGTTTTGGATAGTGAGAAAGAAGAACTAGTGAAGTCCCCTCCAAATCCAATGAATGGAGAGAAAAAGATGTGTGATGGTAACAAAACTTTGGTGGCTTTGAAGAGTCATAGGGAAGCTGAGAGGAGAAGAAGAAACAGAATCAATGGTCATCTTGCAAAACTTCGAGGACTTCTCTCATGTCCTCCAAAGATGGACAAAGCAACCTTACTAGCAGAGGTTATTAGGCAAGTGAAGGAACTGAAAAAGAATGCAAATGAAGAAAGCAAAGGCTACTTAATCCCAAAAGATATCAATGAAGTGAAAGTTGAAATTGAACCATGTGAAAGTGGAGGAGTAGATGGCTCTATTCTTTACAAAGCATCAATCTGCTGTGATTATGGACCTGAGCTTCTATCTGATCTAAAGCAAACTATTGATACACTTCAACTGGATTTGGTAAGGGCAGAAATGTCAACTTTGGGAGACAGAGTTAAGAATGAATTTGTATACACGTGTTGTAAAGTGGATATTTATGATGTTGAGTTATGTCAAGTTATTGCAAGTAATGTTCATCATGCACTTACTTCTGTTTTGGATAAGGCTTCTGCTTCAATGGATTACGAATTAAGACTACCACCGCGTCCTTGCCTTCGGCTGCAAAATGTGACATCTACTTTGTCATGCAACCATGAATTTTGTTCATGTTGA 765 0.383 MDSGYDISRILFNTTSRGGFVSRNSLVLDSEKEELVKSPPNPMNGEKKMCDGNKTLVALKSHREAERRRRNRINGHLAKLRGLLSCPPKMDKATLLAEVIRQVKELKKNANEESKGYLIPKDINEVKVEIEPCESGGVDGSILYKASICCDYGPELLSDLKQTIDTLQLDLVRAEMSTLGDRVKNEFVYTCCKVDIYDVELCQVIASNVHHALTSVLDKASASMDYELRLPPRPCLRLQNVTSTLSCNHEFCSC 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07909 254 Pfam Helix-loop-helix DNA-binding domain 61 106 IPR011598 GO:0046983
Vivi1g07909 254 SMART finulus 63 112 IPR011598 GO:0046983
Vivi1g07909 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 57 106 IPR011598 GO:0046983
Vivi1g07909 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 114 IPR036638 GO:0046983
Vivi1g07909 254 Coils Coil 96 116 - -
Vivi1g07909 254 PANTHER TRANSCRIPTION FACTOR BHLH30 21 223 IPR045847 GO:0003700|GO:0006355
Vivi1g07909 254 Coils Coil 157 177 - -
Vivi1g07909 254 Gene3D - 54 116 IPR036638 GO:0046983
Vivi1g07909 254 CDD ACT_UUR-ACR-like 147 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07909 Vivi-Chr1 219052858 219054992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07909 40 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 39.572 1.11e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g07909 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07909 - - vvo:131595173 335.88