Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07899 ATGGGAATGAGATGTAACACATTTGGATTTTGGTTTAGGATTTATGTTTGCTTTATTTCTGTTTGGGGGATTAGTGAGTGTTTGTCGCTTAACGACGAAGGATTGGCTTTGTTGGAGTTTCGTCAAAGAATAAGTTCTGATCCTCGTGTTGCGTTGGAAAATTGGAATTCAAATGATTGTGACCCTTGCAACTGGTTCGGGGTTCACTGCATCGATGGTAAAGTGCAGACTTTGGATCTAAATGGTCTGTCCTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTAGTCACTTAAAATCACTTGTGTTATGCAATAATAACTTTTCTGGTGAGATTCCTAAAGAGCTTGGAGAATTAGCTGAGTTAGAGTTATTAGATTTAAGGGAGAACAATTTATCAGGATGCATCCCAGTTGAACTTAGTAAAATGTTATCTCTAAAACACTTGTTGCTTTGTGATAACAACATAGAAGAAAGTGATTCTCATCAAGACCAAGGGAATTTCAGATTATTTTCTAAATCACTACTTGATGAATGTTCATCGCCTCTCGCAACATTATTTGCCTGCATTAATAGAAAGTTTGGTCACTGTGTGTGGCATAGCAACATCAAGCAATGGAACAAACCAGATTCGTTGATTATTCCGATTAAAGTAGCACTTCTGAAATGCCTCGATGTCTTTTCGCTGCCTCTGTTCAAGCAAGTGCATGAAGAGAAAAATTTCGACCTTCAGCGTCGTGCTAATGAACCAGAAATCGCGATGAGTGTGCCAAATCTTATTAGTTATGGGCGTCGTAGGTTACTTGAGCATTCGAGTAACCTTGCCGCCGCACCTTATAAAGGTGAAATTCCAAAAGGTTTCAGTCAAACTCCAATTAGCATTAGTAGTGGATCTTTTCCAGCTTCTCCAAATGCAAGAAAGAACCGAACTCAGTCACGTACACCACCATTACCTCCTCCTTCTGATTCTCTTCCAAATGATGGACACCACTCAAGTCTACCAAAAATGGACATACATGAAAGTGTGTGGAAGTATATACTTATTGTCATAGGAATTGTAGTGATTGTCGTTTTGATCGTAGTTCTTCTTTGCCTTTGGAAAAAACCAGCAGCTAAAATAATTAAACCTTGGAACACAGGCATAAGTGGACAGTTGCAAAAGGCTTTTATTACAGGTGTTCCTAAGTTGAATAGAGTAGAATTAGAGACAGCATGTGAAGATTTCAGCAATATTGTTATTAGTTTTGAAGCATGCACTATATTCAAAGGAACATTGTCTAGTGGAGTTGAAATTGCTGTTGTTTCGACTTTGGTTGATTCGCGAAAAGAATGGACTAAGAACATGGAATTGAACTATAGAAAAAAGATTGCGACATTGTCTCGCATTAACCATAAGAACTTTATTAATCTTATTGGATATTGTGAGGAAGAAGATCCATTCACAAGGATGTTTATATTCGAATATGCCCCAAATGGAAGCCTATTTGAGTACCTACATGTTAAAGACGTTGAACGTCTTGAATGGAGTGAAAGGATAAGAATAATAATGGGAACTGCGTATTGTCTTTCGTACATGCACGGTTTAAATCCACCGGTATCTCATACCAAAGTTGCTTCAAATTTGATCATGTTGTCAGATGATTATGCTGCAAAGCTTGCAGAGATCACTTTTAGAACTATTGTAGATTCACCTAGGACAACTAGAGGTGACTCTTCAAAGAAAGCCGAGATGCAACGCGCGGCTTTTGACACCAATGTCTATGATTTCGGAATATTGTTGCTAGAAATCATTTCCGGGAAATTGCCTCATTCTGAAGAACAAGGAAATCTTGTCAACTGGGCTTCGGAGTACTTAAATGACAGAAGAAGCATAAGCTATATGATTGATCCGAGTTTACAATCATTCAAAGACAGTGAACTCGACGTGATCTGTGAGGTGATTCAAGGGTGTATTCAACCCGAACCGAAGTTAAGGCCAACAATGAAAGACATAACTTCGAAATTAAGAGAAGTGGTTAATGTAACACCAGAGCAAGCTTCTCCAAGGCTTTCTCCATTATGGTGGGCTGAACTTGAGATATTATCAGTGGAGGCTACTTGA 2103 0.388 MGMRCNTFGFWFRIYVCFISVWGISECLSLNDEGLALLEFRQRISSDPRVALENWNSNDCDPCNWFGVHCIDGKVQTLDLNGLSLEGTLAPELGKLSHLKSLVLCNNNFSGEIPKELGELAELELLDLRENNLSGCIPVELSKMLSLKHLLLCDNNIEESDSHQDQGNFRLFSKSLLDECSSPLATLFACINRKFGHCVWHSNIKQWNKPDSLIIPIKVALLKCLDVFSLPLFKQVHEEKNFDLQRRANEPEIAMSVPNLISYGRRRLLEHSSNLAAAPYKGEIPKGFSQTPISISSGSFPASPNARKNRTQSRTPPLPPPSDSLPNDGHHSSLPKMDIHESVWKYILIVIGIVVIVVLIVVLLCLWKKPAAKIIKPWNTGISGQLQKAFITGVPKLNRVELETACEDFSNIVISFEACTIFKGTLSSGVEIAVVSTLVDSRKEWTKNMELNYRKKIATLSRINHKNFINLIGYCEEEDPFTRMFIFEYAPNGSLFEYLHVKDVERLEWSERIRIIMGTAYCLSYMHGLNPPVSHTKVASNLIMLSDDYAAKLAEITFRTIVDSPRTTRGDSSKKAEMQRAAFDTNVYDFGILLLEIISGKLPHSEEQGNLVNWASEYLNDRRSISYMIDPSLQSFKDSELDVICEVIQGCIQPEPKLRPTMKDITSKLREVVNVTPEQASPRLSPLWWAELEILSVEAT 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07899 700 ProSiteProfiles Protein kinase domain profile. 372 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07899 700 PANTHER PROTEIN MALE DISCOVERER 2 15 698 - -
Vivi1g07899 700 Gene3D Phosphorylase Kinase; domain 1 384 489 - -
Vivi1g07899 700 SUPERFAMILY L domain-like 29 161 - -
Vivi1g07899 700 MobiDBLite consensus disorder prediction 296 332 - -
Vivi1g07899 700 FunFam Nuclear pore complex protein NUP107 30 163 - -
Vivi1g07899 700 Gene3D Transferase(Phosphotransferase) domain 1 490 681 - -
Vivi1g07899 700 Pfam Protein tyrosine and serine/threonine kinase 421 669 IPR001245 GO:0004672|GO:0006468
Vivi1g07899 700 Gene3D Ribonuclease Inhibitor 32 178 IPR032675 -
Vivi1g07899 700 SUPERFAMILY Protein kinase-like (PK-like) 420 669 IPR011009 -
Vivi1g07899 700 FunFam Inactive receptor-like serine/threonine-protein kinase 381 489 - -
Vivi1g07899 700 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vivi1g07899 700 MobiDBLite consensus disorder prediction 296 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07899 Vivi-Chr1 217475269 217479799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07899 74 672 Receptor kinase-like Gene Family AT5G56040 24.238 4.71e-38 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vivi1g07899 PK_Tyr_Ser-Thr 7.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07899 - - adu:107468254 835.869