Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07883 ATGGATAAGAAATCAACACTTCTAATGAAAAAATATGAGGTAGGACGCATGCTAGGCCAAGGAAATTTTGCCAAAGTTTACCATGCAAGGAACATAAAGACAGGACAAAGTGTTGCAATTAAGGTGTTTAACAAAGACATGATCATGAGGGTTGGTTTGAAGGAACAAATCAAACGTGAAATCTCGGTGATGCGCCGCGTTAGACATCCTAACATTGTCGAATTTTATGAGGTCATGGCAAGCAAAACAAAGATATATTTCGCAATGGAAATCGTGAAAGGCGGCGAGCTTTTCAGTAAAGTTTCCAGGGGGAGGTTGAGGGAAGATGTTGCTAGGAAATACTTCCAACAGCTTATTGAAGCTGTTGATCATTGTCATCGAAGAGGGGTTTACCACCGCGATCTTAAACCGGAGAATCTCCTCCTCGATGAGAATGGTGATCTCAAGGTTTTGGATTTCGGCCTTAGCGCGTTGTCCGAATCAAAAAATACAGATGGTCTTCTTCATACAACGTGTGGAACTCCGGCTTACGTTGCGCCCGAGGTTATCAAGAAAAAAGGCTATGATGGAGCCATGGCAGATATTTGGTCATGTGGTGTAATTCTCTATGTACTATTAGCAGGTTATCTTCCTTTCAGTGATAAAAACCTAATGGACATGTATAAGAAAATCTCAAAGGCAGATTACAAGTGTCCGCAATGGATTCGTCCTGACGCGAAAAGGCTTATTAGTAGAATCCTTGATCCTAATCCAAGAACAAGAATCACCATTAACAAGATAATGCAAAATAGTTGGTTTAGAAAAGGGTATAAGCATATCGAAGGACCACAGTTACCGCCTTTATCGCCTACGCGAGGCGATATCTCAGATGTTTACAATGCATTTGATGATATATCATCACCATCAAGCTCTAATGGAACTCCAAGAGCAATGTCGGTTAAAGACTACGAAGAATATCCAATGAAACCGTATTGTTTCAACGCGTTTGATCTCATATCGCTCTCTTCGGGGTTCGATCTTTCTGGTTTATTCGAGAAAGATACGAGCGAACGAACACATGCAAGATTTTCTACTAAAAGACCACCCTATGTAGTTGTGGCGAAACTCGAAGAGGTAGCGCAATTAGATGGTAGGTTTAAGGTTATGAAGCAAAATGGGATTGTTAGGCTGGAAGGAGTTGAGGCAGGGATAAATGAACCACTCAGTATAGATACAGAAATTTATGAAGTTACTTCTTCATTGTACATTGTTGAGGTAAACAAAATTGCTGGAGATATATTGGAATATAAGAGATTCTGGAACCAGTTCTTAAGGCCTTCTCTAGATGAAATTGCTTGGGTTTGGCAAGGATATGAGCAGATCATATAG 1368 0.4042 MDKKSTLLMKKYEVGRMLGQGNFAKVYHARNIKTGQSVAIKVFNKDMIMRVGLKEQIKREISVMRRVRHPNIVEFYEVMASKTKIYFAMEIVKGGELFSKVSRGRLREDVARKYFQQLIEAVDHCHRRGVYHRDLKPENLLLDENGDLKVLDFGLSALSESKNTDGLLHTTCGTPAYVAPEVIKKKGYDGAMADIWSCGVILYVLLAGYLPFSDKNLMDMYKKISKADYKCPQWIRPDAKRLISRILDPNPRTRITINKIMQNSWFRKGYKHIEGPQLPPLSPTRGDISDVYNAFDDISSPSSSNGTPRAMSVKDYEEYPMKPYCFNAFDLISLSSGFDLSGLFEKDTSERTHARFSTKRPPYVVVAKLEEVAQLDGRFKVMKQNGIVRLEGVEAGINEPLSIDTEIYEVTSSLYIVEVNKIAGDILEYKRFWNQFLRPSLDEIAWVWQGYEQII 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07883 455 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07883 455 FunFam Non-specific serine/threonine protein kinase 2 304 - -
Vivi1g07883 455 CDD STKc_SnRK3 11 265 - -
Vivi1g07883 455 Gene3D Kinase associated domain 1, KA1 320 447 - -
Vivi1g07883 455 FunFam Non-specific serine/threonine protein kinase 321 446 - -
Vivi1g07883 455 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vivi1g07883 455 Gene3D Transferase(Phosphotransferase) domain 1 2 298 - -
Vivi1g07883 455 Pfam NAF domain 324 383 IPR004041 GO:0007165
Vivi1g07883 455 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07883 455 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 431 - -
Vivi1g07883 455 CDD CIPK_C 327 442 - -
Vivi1g07883 455 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Vivi1g07883 455 SUPERFAMILY Protein kinase-like (PK-like) 8 309 IPR011009 -
Vivi1g07883 455 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07883 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vivi1g07883 455 ProSiteProfiles NAF domain profile. 321 345 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07883 Vivi-Chr1 216742465 216744325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07883 1 450 CBL-interacting serine-threonine protein kinases AT5G45820 61.419 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vivi1g07883 Pkinase 1.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07883 K07198 - gmx:100807927 648.662