Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07882 ATGGCTGACGTGCTTTCTCAGAAATTCAAAACCACCCCAAACAACAACAAGAAGGACCCTTCGAATCTGTTATTGGGTCGATTCGAAATCGGGAAGCTCCTCGGCCATGGAACATTCGCCAAGGTATACTACGCGAAGAATCTCAAAACCGGTGAAGGCGTAGCCATAAAAGTGATCGACAAGGAGAAGATTCTCAAAGGTGGTTTGGTCGCCCACATTAAACGCGAGATCTCGATTCTTCGCCGTGTTCGTCATCCCAACATCGTGCAGCTCTTCGAGGTAATGGCGACGAAGACGAAGATCTATTTCGTGATGGAGTATGTTCGTGGAGGCGAGCTTTTTAACAAGGTTGCCAAGGGGAGGTTGAAGGAAGAGGTTGCTAGAAAGTATTTCCAGCAGTTGATTTCCGCGGTTGGGTTTTGTCATGCTAGAGGTGTGTATCATAGGGATCTTAAGCCGGAGAATCTGTTGCTTGATGAGAATGGGAATTTGAAAGTGTCTGATTTTGGTTTGAGTGCTGTGTCGGATCAGATTAGACAGGATGGTTTGTTTCATACTTTTTGTGGCACTCCTGCTTATGTTGCACCTGAGGTTTTGGCTAGGAAGGGGTATGATGGTGCTAAGGTTGATCTTTGGTCTTGTGGGGTTGTTTTGTTTGTTTTGATGGCTGGTTATTTGCCTTTTCATGATCAGAATGTTATGGCAATGTATAAGAAGATTTATAAAGGGGAGTTTCGGTGTCCGAGGTGGTTTTCGCCGGATTTATCGAAACTTCTTGTTCGGCTTCTTGATACGAAGCCGGATACAAGGATTGCTATTCCTGATATTATGGAGAATAGGTGGTTCAAGAAGGGGTTTAAACAGATTAAGTTCTATGTTGAGGATGATAGGCTTTGTAGTATTGATGATAATTTCGGCGACATTGAGGATGATACGGCTTCTGTAACATCGATTGCGTCGGTAGCATCGGTGGCGTCTTTTTCTGATTTATCAATAGAATCTGATTCTGAGGTTGAGACTAGGAGGAGAAATGCACCTTTGCCGAGGCCGGCTAGTTTGAATGCTTTTGACATTATTTCATTCTCACCCGGGTTTGATCTTTCTGGCTTGTTTGAGGAAAGCGGAGACGAGAACAGGATTGTGACTGCTGCGCCGGTTTCAAAGATCATATCAAAATTGGAGGAGATTGCTCAGTTGGTTAGGTTTTCTGTAAGGAAGAAGGATTGCAGGGTGAGCTTGGAGGGTACAAGAGAAGGTGTGAAGGGGCCATTGACTATTGCTGTTGAGATATTCGAACTTACACCTTCTTTGGTTGTTGTCGAGCTGAAGAAAAAAGGAGGCGACAGAGCCGAATACGAGAGATTCTGTAACGAAGACTTGAAACCGGGTTTACAGAATTTGATGGCCGCGGAATCAGCAACTTCCTCAGCTTTGTCATTACCACCTGCCGAGCCTACATTACTCCGCGTGCTTTCTGAACCAGTTCACAACCTGCTATCAGAGATGGATTCGCCGCGCTCTCTACCCGAAGAGTGA 1536 0.4518 MADVLSQKFKTTPNNNKKDPSNLLLGRFEIGKLLGHGTFAKVYYAKNLKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYKGEFRCPRWFSPDLSKLLVRLLDTKPDTRIAIPDIMENRWFKKGFKQIKFYVEDDRLCSIDDNFGDIEDDTASVTSIASVASVASFSDLSIESDSEVETRRRNAPLPRPASLNAFDIISFSPGFDLSGLFEESGDENRIVTAAPVSKIISKLEEIAQLVRFSVRKKDCRVSLEGTREGVKGPLTIAVEIFELTPSLVVVELKKKGGDRAEYERFCNEDLKPGLQNLMAAESATSSALSLPPAEPTLLRVLSEPVHNLLSEMDSPRSLPEE 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07882 511 Gene3D Transferase(Phosphotransferase) domain 1 18 343 - -
Vivi1g07882 511 Gene3D Kinase associated domain 1, KA1 348 469 - -
Vivi1g07882 511 SMART serkin_6 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07882 511 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Vivi1g07882 511 CDD STKc_SnRK3 27 281 - -
Vivi1g07882 511 FunFam Non-specific serine/threonine protein kinase 20 107 - -
Vivi1g07882 511 ProSiteProfiles NAF domain profile. 348 372 IPR018451 GO:0007165
Vivi1g07882 511 FunFam Non-specific serine/threonine protein kinase 350 468 - -
Vivi1g07882 511 Pfam NAF domain 350 406 IPR004041 GO:0007165
Vivi1g07882 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Vivi1g07882 511 CDD CIPK_C 354 465 - -
Vivi1g07882 511 ProSiteProfiles Protein kinase domain profile. 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07882 511 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07882 511 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 19 461 - -
Vivi1g07882 511 FunFam Non-specific serine/threonine protein kinase 17 327 - -
Vivi1g07882 511 SUPERFAMILY Protein kinase-like (PK-like) 24 283 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07882 Vivi-Chr1 216726245 216728554 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07882 1 487 CBL-interacting serine-threonine protein kinases AT4G18700 73.992 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vivi1g07882 Pkinase 5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07882 - - gmx:100814720 840.491