Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07877 ATGAAACTCTTTTACATGTTCTTGATGTTCTTGATGAATCTCCTATTGTTTATTACTCTCACAAAATCATCATCTTCATCTTCATGCAACATTGAAAACATGAATCTTATATCAAAGGCTTTCCAATCTGTCTCTGGATTCAACTCTTCATTCTTCCAAACAAAAGGCTTCTTAATCTGTTCAAAGGGTGAGAACGAGAACGAGAATGAGATTAACATCATAAACCTTCCATCCAAAAACCTAACCGGAAACATCTCATGGAGATACCTAAAAAACATGACAACCTTAAAGATTCTCGATCTCTCCGAAAATCATCTACAAGGTCAAGTCCCAAACTGGTTCTGGAAAACTACCTCATCAAGTTTATCAACAGTGAATCTCTCCAACAACAGATTCGGTGGAAGCATTGCATTCCAAATGAAACCCTTTTCATCATCCCTACAAACTCTCAATCTCTCAAACAACAGATTCACAAACCAGGTTCATCTTTCCTCTTTCCAAAACCTTAAAATCCTCGACCTTTCCGACAACAACCTCAACACCTTACCTTCAGGCCTCCAAAATCTCACGAAACTCAACCACCTCGATCTCTCAAACTGTAACATCAAAGCAAACATAAAACCCATTTCGAATCTCACTTCACTCACTTCCTTAAACCTCTCAAACAATACCTTAAACGGTACTTTCCCTTACGACTTTCCACCTCTCAACAACCTTAATTTCCTCAACATCTCAAACAACAACTTCAAATCTTCATCTCCATTGTCAAAACTAATCAAAAGATTCGGAAAATCATCGTTCATTCACGCAGGTCACAATTTCGATTCCGACAATAACCTTAACGCATCCAAAACACCAAACATTCATTCAAAACCAAACCCAAACCCAAACCCACCACACCACCACCGCCACCATCAACAACAACAACTCCACATGAAAAAAGCCAAACAAAAAAACAAACACAAACACAATTCAAAAACAAAAACCAAGATTATTATCATCGCAACAGTTTCCTCAGTTTCAACTTTCATTCTCGTCGTGTTATCCATATTAGCAATCATTCATTACAGAAAAAAACGACAACAAGCAAAGAAGAACAAATGGGCAATCTCAATTTCAAAACCAGTGATAGGATTAGGATCAACAACAACCCTTAAATCAGGACCGTTCGAATTCGAAACCGAATCCGGAACATCATGGGTGGCTGATCTGAAAGAACCATCTTCCGCAGCAGTTGTAATGTTTGAGAAGCCACTGATGAACATCACGTTCGTTGATCTCATGAACGCCACGTCATACTTCGGAAAAGATTCACAGCTTGCTGAAGGTAGATGTGGGCCAGTTTACCGTGCGGTTTTACCTGGTGACATACACGTGGCAATCAAGGTTCTTGAAAACGCTAGAGACGTTGATCATGATGACTCTGTTGCAACTTTCGTTGACTTGTCGAAGCTTAAACATCCCAATCTTTTGCCTCTCTCCGGTTACTGTATTGCAGGGAAGGAAAAGCTAGTTTTGTATGAGTTTATGTCAAACGGAGATTTAGGCCGGTGGTTACAGGAATTACCGACGGGAGAGACTAATGTGGAGGATTGGAGCACTGACACATGGGAAATTCAAAACGGTGTCGGATCACGAACGCCTTCGCCGGAGAAAATGGGGTGGCCAACGCGACACAGTATTGCTATAGGTGTCGCGCGTGGTCTAGCTTTCCTCCACCATGCTGGATCAAAGCCCGTTGTCCACGGCCATTTGGTAACATCGAACGTCCTTCTCGCGGATGACTTTGAGCCACGAATAGCCGATTTCGGGTTCAGAAAATTCGGACAACAATGTCCTCCGAATTGCAGTACTGAAACAGATGTTTATTGCTTTGGTGTCGTGCTTATGGAGCTTCTAACGGGGAAGCCTGGTACGGCGGAGACGGTTGTTTGGGTGAGAAAGCTTGTAAGAGAGGGGCATGGAGTGAGGGCGCTTGATGATAGGATCAAACTCGGTGGTTGTGACTCGGAGAATCAAATGGTGGAGAGTCTCCGAGTTGCGTATCTTTGTACTGCTGAGTCGCCTGCGAAGAGGCCTACAATGCAGCAAGTTTTGGGACTTCTCAAAGATATTCATCCTAGAGCTAGATTAGAATGA 2139 0.4236 MKLFYMFLMFLMNLLLFITLTKSSSSSSCNIENMNLISKAFQSVSGFNSSFFQTKGFLICSKGENENENEINIINLPSKNLTGNISWRYLKNMTTLKILDLSENHLQGQVPNWFWKTTSSSLSTVNLSNNRFGGSIAFQMKPFSSSLQTLNLSNNRFTNQVHLSSFQNLKILDLSDNNLNTLPSGLQNLTKLNHLDLSNCNIKANIKPISNLTSLTSLNLSNNTLNGTFPYDFPPLNNLNFLNISNNNFKSSSPLSKLIKRFGKSSFIHAGHNFDSDNNLNASKTPNIHSKPNPNPNPPHHHRHHQQQQLHMKKAKQKNKHKHNSKTKTKIIIIATVSSVSTFILVVLSILAIIHYRKKRQQAKKNKWAISISKPVIGLGSTTTLKSGPFEFETESGTSWVADLKEPSSAAVVMFEKPLMNITFVDLMNATSYFGKDSQLAEGRCGPVYRAVLPGDIHVAIKVLENARDVDHDDSVATFVDLSKLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLQELPTGETNVEDWSTDTWEIQNGVGSRTPSPEKMGWPTRHSIAIGVARGLAFLHHAGSKPVVHGHLVTSNVLLADDFEPRIADFGFRKFGQQCPPNCSTETDVYCFGVVLMELLTGKPGTAETVVWVRKLVREGHGVRALDDRIKLGGCDSENQMVESLRVAYLCTAESPAKRPTMQQVLGLLKDIHPRARLE 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07877 712 MobiDBLite consensus disorder prediction 296 326 - -
Vivi1g07877 712 Gene3D Phosphorylase Kinase; domain 1 394 509 - -
Vivi1g07877 712 ProSiteProfiles Protein kinase domain profile. 434 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g07877 712 MobiDBLite consensus disorder prediction 275 290 - -
Vivi1g07877 712 Pfam Protein tyrosine and serine/threonine kinase 437 607 IPR001245 GO:0004672|GO:0006468
Vivi1g07877 712 Pfam Leucine rich repeat 146 202 IPR001611 GO:0005515
Vivi1g07877 712 Gene3D Ribonuclease Inhibitor 32 140 IPR032675 -
Vivi1g07877 712 PRINTS Leucine-rich repeat signature 169 182 - -
Vivi1g07877 712 PRINTS Leucine-rich repeat signature 212 225 - -
Vivi1g07877 712 ProSiteProfiles Leucine-rich repeat profile. 191 213 IPR001611 GO:0005515
Vivi1g07877 712 SMART LRR_typ_2 212 235 IPR003591 -
Vivi1g07877 712 SMART LRR_typ_2 93 116 IPR003591 -
Vivi1g07877 712 SMART LRR_typ_2 166 188 IPR003591 -
Vivi1g07877 712 Gene3D Transferase(Phosphotransferase) domain 1 510 711 - -
Vivi1g07877 712 ProSiteProfiles Leucine-rich repeat profile. 238 259 IPR001611 GO:0005515
Vivi1g07877 712 SUPERFAMILY L domain-like 68 254 - -
Vivi1g07877 712 SUPERFAMILY Protein kinase-like (PK-like) 413 702 IPR011009 -
Vivi1g07877 712 FunFam Putative LRR receptor-like serine/threonine-protein kinase 395 509 - -
Vivi1g07877 712 ProSiteProfiles Leucine-rich repeat profile. 168 190 IPR001611 GO:0005515
Vivi1g07877 712 Gene3D Ribonuclease Inhibitor 141 283 IPR032675 -
Vivi1g07877 712 ProSiteProfiles Leucine-rich repeat profile. 146 167 IPR001611 GO:0005515
Vivi1g07877 712 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 52 705 - -
Vivi1g07877 712 MobiDBLite consensus disorder prediction 275 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07877 Vivi-Chr1 216550568 216554511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07877 43 705 Receptor kinase-like Gene Family AT5G07280 28.054 1.92e-65 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vivi1g07877 PK_Tyr_Ser-Thr 1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07877 - - gmx:100778920 841.262